Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4713

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,666,228	+		GFF4712	0.46	+0.2
1,666,229	-		GFF4712	0.46	+0.5
1,666,229	-		GFF4712	0.46	-0.6
1,666,342	+		GFF4712	0.56	+0.3
1,666,342	+		GFF4712	0.56	-0.5
1,666,343	-		GFF4712	0.56	-0.5
1,666,343	-		GFF4712	0.56	+0.2
1,666,948	-				+0.8
1,667,057	+		GFF4713	0.13	+0.2
1,667,345	+		GFF4713	0.82	-0.3
1,667,351	+		GFF4713	0.83	-0.5
1,667,437	+				+1.2
1,667,437	+				+0.7
1,667,458	+		GFF4714	0.10	-0.4
1,667,459	-		GFF4714	0.10	+1.8
1,667,535	+		GFF4714	0.27	-0.9
1,667,535	+		GFF4714	0.27	+1.4
1,667,536	-		GFF4714	0.28	+1.4
1,667,536	-		GFF4714	0.28	-0.2
1,667,919	+				-0.9
1,667,920	-				-0.8
1,667,920	-				-1.2