Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4535

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,461,272	+		GFF4534	0.26	-0.0
1,461,378	-		GFF4534	0.35	-0.5
1,461,402	-		GFF4534	0.37	-0.6
1,461,402	-		GFF4534	0.37	-0.0
1,461,510	-		GFF4534	0.46	-0.5
1,461,510	-		GFF4534	0.46	-1.0
1,461,510	-		GFF4534	0.46	-0.8
1,461,542	+		GFF4534	0.48	-1.4
1,461,542	+		GFF4534	0.48	-2.7
1,461,542	+		GFF4534	0.48	-1.4
1,461,542	+		GFF4534	0.48	-0.9
1,461,543	-		GFF4534	0.48	-1.0
1,461,543	-		GFF4534	0.48	-3.0
1,461,543	-		GFF4534	0.48	-1.4
1,461,675	-		GFF4534	0.59	+1.0
1,461,675	-		GFF4534	0.59	-0.6
1,461,675	-		GFF4534	0.59	-2.2
1,461,770	+		GFF4534	0.67	-1.6
1,461,771	-		GFF4534	0.68	-0.0
1,461,807	-		GFF4534	0.71	-1.0
1,461,860	+		GFF4534	0.75	-1.8
1,462,035	-		GFF4534	0.90	-2.2
1,462,035	-		GFF4534	0.90	+0.2
1,462,195	-				+0.5
1,462,501	+		GFF4535	0.46	-1.4
1,462,502	-		GFF4535	0.47	-2.4
1,462,510	+		GFF4535	0.48	-0.6
1,462,511	-		GFF4535	0.48	-3.4
1,462,567	+		GFF4535	0.58	-0.4
1,462,636	+		GFF4535	0.70	-1.4
1,462,636	+		GFF4535	0.70	-0.5
1,462,637	-		GFF4535	0.70	-0.6
1,462,804	+				-1.4
1,462,804	+				-0.4
1,462,804	+				-3.6
1,462,804	+				-1.8
1,462,805	-				-1.2
1,462,805	-				-2.2
1,462,805	-				-2.6
1,462,805	-				-2.2
1,462,805	-				-1.6
1,462,805	-				-0.3
1,462,807	-				-0.9
1,463,301	+		GFF4536	0.62	-1.3
1,463,301	+		GFF4536	0.62	-1.2
1,463,301	+		GFF4536	0.62	+1.0
1,463,302	-		GFF4536	0.62	-0.0
1,463,322	+		GFF4536	0.65	+0.2
1,463,355	+		GFF4536	0.69	-1.4
1,463,377	-		GFF4536	0.72	-0.2
1,463,391	+		GFF4536	0.73	+1.4
1,463,598	+				-0.3
1,463,598	+				+1.0
1,463,599	-				+0.2
1,463,667	+				+0.7
1,463,667	+				-0.2
1,463,667	+				+0.5
1,463,667	+				-0.9
1,463,667	+				+0.6
1,463,667	-				+0.2
1,463,668	-				+0.2
1,463,668	-				+0.5
1,463,668	-				+0.2
1,463,668	-				+0.4
1,463,668	-				+0.0
1,463,668	-				+0.3
1,463,668	-				-0.2