Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4534

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,460,690	+		GFF4533	0.10	-0.1
1,460,690	+		GFF4533	0.10	-0.8
1,460,691	-		GFF4533	0.11	+0.3
1,460,691	-		GFF4533	0.11	+0.5
1,460,777	+		GFF4533	0.40	-0.8
1,460,777	+		GFF4533	0.40	-0.0
1,460,778	-		GFF4533	0.41	-0.8
1,460,778	-		GFF4533	0.41	+0.2
1,460,778	-		GFF4533	0.41	+0.1
1,460,780	+		GFF4533	0.41	-0.2
1,460,781	-		GFF4533	0.42	-0.2
1,461,272	+		GFF4534	0.26	-0.0
1,461,378	-		GFF4534	0.35	-0.5
1,461,402	-		GFF4534	0.37	-0.6
1,461,402	-		GFF4534	0.37	-0.0
1,461,510	-		GFF4534	0.46	-0.5
1,461,510	-		GFF4534	0.46	-1.0
1,461,510	-		GFF4534	0.46	-0.8
1,461,542	+		GFF4534	0.48	-1.4
1,461,542	+		GFF4534	0.48	-2.7
1,461,542	+		GFF4534	0.48	-1.4
1,461,542	+		GFF4534	0.48	-0.9
1,461,543	-		GFF4534	0.48	-1.0
1,461,543	-		GFF4534	0.48	-3.0
1,461,543	-		GFF4534	0.48	-1.4
1,461,675	-		GFF4534	0.59	+1.0
1,461,675	-		GFF4534	0.59	-0.6
1,461,675	-		GFF4534	0.59	-2.2
1,461,770	+		GFF4534	0.67	-1.6
1,461,771	-		GFF4534	0.68	-0.0
1,461,807	-		GFF4534	0.71	-1.0
1,461,860	+		GFF4534	0.75	-1.8
1,462,035	-		GFF4534	0.90	-2.2
1,462,035	-		GFF4534	0.90	+0.2
1,462,195	-				+0.5
1,462,501	+		GFF4535	0.46	-1.4
1,462,502	-		GFF4535	0.47	-2.4
1,462,510	+		GFF4535	0.48	-0.6
1,462,511	-		GFF4535	0.48	-3.4
1,462,567	+		GFF4535	0.58	-0.4
1,462,636	+		GFF4535	0.70	-1.4
1,462,636	+		GFF4535	0.70	-0.5
1,462,637	-		GFF4535	0.70	-0.6
1,462,804	+				-1.4
1,462,804	+				-0.4
1,462,804	+				-3.6
1,462,804	+				-1.8
1,462,805	-				-1.2
1,462,805	-				-2.2
1,462,805	-				-2.6
1,462,805	-				-2.2
1,462,805	-				-1.6
1,462,805	-				-0.3
1,462,807	-				-0.9