Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4333

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,259,315	+		GFF4330	0.71	+0.5
1,259,319	+		GFF4330	0.72	+0.7
1,259,319	+		GFF4330	0.72	-0.0
1,259,319	+		GFF4330	0.72	+1.5
1,259,320	-		GFF4330	0.72	-0.1
1,259,320	-		GFF4330	0.72	+0.6
1,259,320	-		GFF4330	0.72	-0.4
1,259,412	+		GFF4330	0.82	-0.4
1,259,412	+		GFF4330	0.82	+0.4
1,259,412	+		GFF4330	0.82	+1.5
1,259,412	+		GFF4330	0.82	+0.2
1,259,413	-		GFF4330	0.82	-0.2
1,259,473	-		GFF4330	0.88	-0.2
1,259,473	-		GFF4330	0.88	+0.7
1,259,473	-		GFF4330	0.88	+0.5
1,259,619	+				+0.1
1,259,689	-		GFF4331	0.12	+0.3
1,259,748	+		GFF4331	0.26	-0.1
1,259,749	-		GFF4331	0.26	-2.0
1,259,871	+		GFF4331	0.54	+1.1
1,259,871	+		GFF4331	0.54	+0.5
1,259,871	+		GFF4331	0.54	-0.2
1,259,871	+		GFF4331	0.54	-0.6
1,259,871	+		GFF4331	0.54	+1.0
1,259,871	+		GFF4331	0.54	-0.1
1,259,871	+		GFF4331	0.54	+0.1
1,259,872	-		GFF4331	0.55	-0.2
1,259,991	+		GFF4331	0.83	-0.3
1,259,992	-		GFF4331	0.83	-0.1
1,260,068	+				+0.5
1,260,068	+				+0.2
1,260,068	+				-0.7
1,260,068	+				+0.5
1,260,068	+				+0.1
1,260,068	+				-0.3
1,260,069	-				+0.4
1,260,069	-				-0.4
1,260,069	-				+0.1
1,260,069	-				-0.3
1,260,413	-				-1.9
1,260,577	+		GFF4333	0.13	+0.7
1,260,577	+		GFF4333	0.13	-1.8
1,260,577	+		GFF4333	0.13	-1.7
1,260,577	+		GFF4333	0.13	-0.6
1,260,577	+		GFF4333	0.13	-2.8
1,260,578	-		GFF4333	0.13	-0.9
1,260,578	-		GFF4333	0.13	-0.5
1,260,578	-		GFF4333	0.13	-1.6
1,260,578	-		GFF4333	0.13	-0.6
1,260,583	+		GFF4333	0.13	-2.2
1,260,583	+		GFF4333	0.13	+1.5
1,260,583	+		GFF4333	0.13	-1.2
1,260,710	-		GFF4333	0.19	-0.0
1,260,720	+		GFF4333	0.19	-0.5
1,260,721	-		GFF4333	0.19	-0.3
1,260,772	+		GFF4333	0.21	-0.9
1,260,772	+		GFF4333	0.21	-0.0
1,260,773	-		GFF4333	0.22	-0.5
1,260,773	-		GFF4333	0.22	-2.5
1,260,773	-		GFF4333	0.22	-2.2
1,260,773	-		GFF4333	0.22	-1.6
1,261,144	+		GFF4333	0.38	-0.0
1,261,144	+		GFF4333	0.38	+1.1
1,261,145	-		GFF4333	0.38	+0.5
1,261,282	+		GFF4333	0.44	-1.0
1,261,297	+		GFF4333	0.45	-1.0
1,261,298	-		GFF4333	0.45	-2.7
1,261,333	+		GFF4333	0.46	-1.0
1,261,333	+		GFF4333	0.46	-0.9
1,261,333	+		GFF4333	0.46	-0.5
1,261,334	-		GFF4333	0.46	-2.6
1,261,334	-		GFF4333	0.46	-1.2
1,261,393	+		GFF4333	0.49	-1.4
1,261,393	+		GFF4333	0.49	-2.0
1,261,394	-		GFF4333	0.49	-1.0
1,261,394	-		GFF4333	0.49	-2.0
1,261,450	+		GFF4333	0.51	-1.6
1,261,451	-		GFF4333	0.51	-3.0
1,261,561	+		GFF4333	0.56	-0.9
1,262,014	+		GFF4333	0.76	-1.1
1,262,014	+		GFF4333	0.76	-0.8
1,262,015	-		GFF4333	0.76	-0.0
1,262,101	+		GFF4333	0.80	-2.7
1,262,209	+		GFF4333	0.85	-0.4
1,262,209	+		GFF4333	0.85	-2.0
1,262,210	-		GFF4333	0.85	-1.9
1,262,248	+		GFF4333	0.86	-2.0
1,262,248	+		GFF4333	0.86	-2.9
1,262,248	+		GFF4333	0.86	-2.0
1,262,248	+		GFF4333	0.86	-1.5
1,262,249	-		GFF4333	0.86	-0.5
1,262,249	-		GFF4333	0.86	-0.6
1,262,434	+				-1.4
1,262,434	+				-1.4
1,262,435	-				+1.0