Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4299

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,223,150	+				-0.5
1,223,150	+				-0.1
1,223,150	+				-0.4
1,223,150	+				-0.1
1,223,150	+				+0.2
1,223,150	+				+0.6
1,223,150	+				-0.1
1,223,150	+				-0.0
1,223,150	+				-0.2
1,223,150	+				-0.0
1,223,150	+				+0.4
1,223,150	+				-0.0
1,223,150	+				-0.9
1,223,150	+				+0.3
1,223,150	+				+0.2
1,223,150	+				+0.7
1,223,150	+				-0.3
1,223,150	+				-0.1
1,223,150	+				-0.0
1,223,150	+				+0.2
1,223,151	-				-0.0
1,223,151	-				+1.2
1,223,151	-				-1.5
1,223,151	-				+0.7
1,223,151	-				-0.6
1,223,151	-				+0.1
1,223,151	-				+0.3
1,223,151	-				-0.5
1,223,151	-				+0.7
1,223,151	-				-0.3
1,223,151	-				+0.5
1,223,151	-				-0.0
1,223,198	+				-1.6
1,223,199	-				-0.4
1,223,203	+				-1.9
1,223,203	+				-0.3
1,223,204	-				-1.6
1,224,164	+		GFF4299	0.16	-1.2
1,224,164	+		GFF4299	0.16	-1.1
1,224,164	+		GFF4299	0.16	-1.6
1,224,164	+		GFF4299	0.16	+1.0
1,224,165	-		GFF4299	0.16	-0.4
1,224,165	-		GFF4299	0.16	-0.6
1,224,218	+		GFF4299	0.27	+0.7
1,224,218	+		GFF4299	0.27	-0.8
1,224,218	+		GFF4299	0.27	-1.2
1,224,218	+		GFF4299	0.27	-3.0
1,224,218	+		GFF4299	0.27	-1.1
1,224,218	+		GFF4299	0.27	-0.8
1,224,219	-		GFF4299	0.27	+1.0
1,224,284	+		GFF4299	0.40	-1.6
1,224,285	-		GFF4299	0.40	-1.2
1,224,285	-		GFF4299	0.40	-0.2
1,224,285	-		GFF4299	0.40	-0.9
1,224,651	+				-2.0
1,224,651	+				-4.1
1,224,652	-				-2.6
1,224,652	-				-3.6
1,224,652	-				-2.9
1,224,652	-				-3.2
1,224,652	-				-2.0
1,224,873	+		GFF4300	0.20	-3.8
1,224,874	-		GFF4300	0.20	-2.2
1,224,879	+		GFF4300	0.20	-1.6
1,224,880	-		GFF4300	0.21	-2.0
1,224,880	-		GFF4300	0.21	-2.0
1,224,927	+		GFF4300	0.24	-2.4
1,224,927	+		GFF4300	0.24	-3.4
1,224,927	+		GFF4300	0.24	-0.6
1,224,928	-		GFF4300	0.24	-3.9
1,224,928	-		GFF4300	0.24	-3.2
1,225,095	+		GFF4300	0.37	-1.9
1,225,095	+		GFF4300	0.37	-1.0
1,225,096	-		GFF4300	0.37	-3.6
1,225,096	-		GFF4300	0.37	-0.6
1,225,096	-		GFF4300	0.37	-3.8
1,225,096	-		GFF4300	0.37	-1.0
1,225,096	-		GFF4300	0.37	-2.0
1,225,096	-		GFF4300	0.37	-2.5
1,225,096	-		GFF4300	0.37	-3.0
1,225,188	+		GFF4300	0.43	-3.9
1,225,188	+		GFF4300	0.43	-2.9
1,225,188	+		GFF4300	0.43	-1.0
1,225,188	+		GFF4300	0.43	-0.6
1,225,189	-		GFF4300	0.44	-1.6