Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4293

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,216,990	-		GFF4291	0.25	-3.0
1,217,220	+		GFF4291	0.56	-2.9
1,217,220	+		GFF4291	0.56	-0.9
1,217,220	+		GFF4291	0.56	-1.9
1,217,220	+		GFF4291	0.56	-0.0
1,217,220	+		GFF4291	0.56	-3.1
1,217,221	-		GFF4291	0.56	-3.1
1,217,221	-		GFF4291	0.56	-3.1
1,217,532	+				-3.7
1,217,532	+				-2.9
1,217,532	+				-0.0
1,217,533	-				-0.6
1,217,533	-				-3.2
1,217,618	+		GFF4292	0.12	-4.7
1,217,630	+		GFF4292	0.16	-4.6
1,217,630	+		GFF4292	0.16	-4.1
1,218,091	+				-4.3
1,218,091	+				-3.1
1,218,091	+				-4.7
1,218,091	+				-2.2
1,218,092	-				-3.5
1,218,092	-				-3.5
1,218,092	-				-5.0
1,218,350	-		GFF4293	0.21	-1.6
1,218,878	-		GFF4293	0.51	-4.7
1,218,946	+		GFF4293	0.55	-1.9
1,218,946	+		GFF4293	0.55	-2.4
1,218,947	-		GFF4293	0.55	-1.4
1,218,947	-		GFF4293	0.55	-4.5
1,218,947	-		GFF4293	0.55	-3.0
1,218,947	-		GFF4293	0.55	-2.9
1,218,976	+		GFF4293	0.56	-3.3
1,218,976	+		GFF4293	0.56	-3.5
1,218,976	+		GFF4293	0.56	-1.9
1,218,977	-		GFF4293	0.57	-5.7
1,219,001	-		GFF4293	0.58	-4.7
1,219,408	+		GFF4293	0.81	-3.7
1,219,408	+		GFF4293	0.81	-3.0
1,219,408	+		GFF4293	0.81	-3.6
1,219,408	+		GFF4293	0.81	-2.0
1,219,408	+		GFF4293	0.81	-3.1
1,219,408	+		GFF4293	0.81	-5.3
1,219,409	-		GFF4293	0.81	-2.4
1,219,409	-		GFF4293	0.81	-0.6
1,219,409	-		GFF4293	0.81	-5.9
1,219,612	+				-3.3
1,219,612	+				-1.6
1,219,613	-				-3.0
1,219,613	-				-4.0
1,219,613	-				-3.2
1,219,739	-				-3.9
1,219,739	-				-1.7
1,219,744	+				-2.2
1,219,744	+				-3.7
1,219,744	+				-4.9
1,219,744	+				-4.8
1,219,744	+				-3.9
1,219,744	+				-2.0
1,219,744	+				-5.6
1,219,744	+				-2.5
1,219,744	+				-4.2
1,219,745	-				-2.5
1,219,745	-				-3.9
1,219,745	-				-2.2
1,219,799	+				-2.3
1,219,799	+				-2.6
1,219,800	-				-1.5
1,219,976	+		GFF4294	0.26	+1.0
1,219,976	+		GFF4294	0.26	-1.8
1,219,976	+		GFF4294	0.26	-1.8
1,219,976	+		GFF4294	0.26	-1.7
1,219,976	+		GFF4294	0.26	-1.5
1,219,976	+		GFF4294	0.26	-1.3
1,219,976	+		GFF4294	0.26	-1.2
1,219,977	-		GFF4294	0.26	+0.1
1,219,977	-		GFF4294	0.26	-1.2
1,219,977	-		GFF4294	0.26	-0.6
1,219,977	-		GFF4294	0.26	+0.3
1,220,198	+		GFF4294	0.54	-2.1
1,220,198	+		GFF4294	0.54	-3.2
1,220,198	+		GFF4294	0.54	-3.0
1,220,198	+		GFF4294	0.54	-3.0
1,220,198	+		GFF4294	0.54	-2.4
1,220,198	+		GFF4294	0.54	-2.6
1,220,198	+		GFF4294	0.54	-2.0
1,220,198	+		GFF4294	0.54	-1.4
1,220,198	+		GFF4294	0.54	-0.6
1,220,198	+		GFF4294	0.54	-3.1
1,220,198	+		GFF4294	0.54	-1.6
1,220,198	+		GFF4294	0.54	-2.8
1,220,198	+		GFF4294	0.54	-0.7
1,220,198	+		GFF4294	0.54	-2.0
1,220,198	+		GFF4294	0.54	-1.7
1,220,199	-		GFF4294	0.54	-1.4
1,220,199	-		GFF4294	0.54	-2.1
1,220,199	-		GFF4294	0.54	-1.2
1,220,199	-		GFF4294	0.54	-1.7
1,220,199	-		GFF4294	0.54	-1.3
1,220,199	-		GFF4294	0.54	-1.1
1,220,199	-		GFF4294	0.54	-0.9
1,220,199	-		GFF4294	0.54	-1.2
1,220,199	-		GFF4294	0.54	-1.5
1,220,441	+		GFF4294	0.85	-2.2
1,220,575	-				-0.4
1,220,575	-				-2.0
1,220,575	-				-0.1
1,220,588	+				-2.7
1,220,588	+				-1.2
1,220,588	+				-3.7
1,220,588	+				-1.1
1,220,589	-				-1.2
1,220,589	-				-3.1
1,220,589	-				-1.4
1,220,589	-				-4.0
1,220,590	+				-1.8
1,220,590	+				-2.5
1,220,591	-				-0.7
1,220,591	-				-3.0
1,220,617	+				-2.1
1,220,617	+				-2.9
1,220,618	-				-0.4
1,220,618	-				-1.4
1,220,618	-				-0.2
1,220,619	+				-2.7
1,220,619	+				-2.3
1,220,619	+				-2.4
1,220,619	+				-1.1
1,220,619	+				-2.6
1,220,619	+				-3.6
1,220,619	+				-3.5
1,220,620	-				-1.9
1,220,620	-				-1.8
1,220,620	-				-0.5
1,220,620	-				-1.5
1,220,620	-				-1.6
1,220,620	-				-0.8
1,220,634	+				+0.1
1,220,683	+				-0.1
1,220,684	-				+1.5
1,220,684	-				-0.3
1,220,717	-				+1.0