Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4289

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,214,408	-				-0.3
1,214,422	+				+0.1
1,214,468	-				-0.3
1,214,474	+				+0.5
1,214,475	-				-0.0
1,214,735	+		GFF4289	0.19	-3.5
1,214,735	+		GFF4289	0.19	-2.2
1,214,735	+		GFF4289	0.19	-4.2
1,214,736	-		GFF4289	0.19	-2.6
1,215,165	-		GFF4289	0.51	-3.5
1,215,500	+		GFF4289	0.77	-4.9
1,215,501	-		GFF4289	0.77	-1.4
1,215,501	-		GFF4289	0.77	-4.1
1,215,501	-		GFF4289	0.77	-2.5
1,215,501	-		GFF4289	0.77	-3.2
1,215,501	-		GFF4289	0.77	-2.7
1,215,501	-		GFF4289	0.77	-3.0
1,215,501	-		GFF4289	0.77	-4.7
1,215,557	+		GFF4289	0.81	-4.4
1,215,557	+		GFF4289	0.81	-3.5
1,215,557	+		GFF4289	0.81	-3.7
1,215,557	+		GFF4289	0.81	-4.8
1,215,563	+		GFF4289	0.82	-3.6
1,215,801	+				-1.6
1,215,802	-				+1.0
1,215,802	-				-0.4
1,215,845	-				-0.6
1,215,853	+				-4.3
1,215,853	+				-3.8
1,215,854	-				-2.7
1,215,854	-				-4.8
1,215,854	-				-4.2
1,215,854	-				-2.7
1,215,854	-				-2.9
1,215,854	-				-3.7
1,215,854	-				-4.1
1,216,126	+		GFF4290	0.29	-2.0
1,216,127	-		GFF4290	0.29	-2.7
1,216,129	+		GFF4290	0.29	-4.3
1,216,130	-		GFF4290	0.30	-3.4
1,216,165	+		GFF4290	0.33	-1.6
1,216,165	+		GFF4290	0.33	-2.8
1,216,165	+		GFF4290	0.33	-3.0
1,216,165	+		GFF4290	0.33	-3.4
1,216,165	+		GFF4290	0.33	-4.4
1,216,166	-		GFF4290	0.33	-4.3
1,216,166	-		GFF4290	0.33	-2.9
1,216,166	-		GFF4290	0.33	-0.6
1,216,166	-		GFF4290	0.33	-4.2
1,216,166	-		GFF4290	0.33	-3.6
1,216,166	-		GFF4290	0.33	-2.6