Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4255

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,177,929	+				-0.3
1,177,929	+				-0.7
1,177,929	+				-0.4
1,177,929	+				-1.0
1,177,930	-				-0.3
1,177,930	-				+0.2
1,177,930	-				-0.6
1,177,930	-				-1.0
1,177,930	-				-0.6
1,177,930	-				-0.0
1,177,930	-				-0.0
1,178,036	+				+1.0
1,178,036	+				-1.0
1,178,321	+		GFF4254	0.77	-0.0
1,178,321	+		GFF4254	0.77	-0.2
1,178,321	+		GFF4254	0.77	-0.0
1,178,321	+		GFF4254	0.77	-0.5
1,178,321	+		GFF4254	0.77	+0.1
1,178,321	+		GFF4254	0.77	-0.1
1,178,321	+		GFF4254	0.77	+0.5
1,178,321	+		GFF4254	0.77	-0.4
1,178,321	+		GFF4254	0.77	-0.3
1,178,321	+		GFF4254	0.77	-0.0
1,178,321	+		GFF4254	0.77	-0.8
1,178,321	+		GFF4254	0.77	+0.1
1,178,322	-		GFF4254	0.77	-0.5
1,178,322	-		GFF4254	0.77	+0.3
1,178,322	-		GFF4254	0.77	+1.4
1,178,322	-		GFF4254	0.77	+0.2
1,178,322	-		GFF4254	0.77	+0.7
1,178,322	-		GFF4254	0.77	+1.0
1,178,322	-		GFF4254	0.77	+0.6
1,178,322	-		GFF4254	0.77	+0.5
1,178,322	-		GFF4254	0.77	-0.1
1,178,322	-		GFF4254	0.77	+0.2
1,178,333	+		GFF4254	0.80	+0.2
1,178,333	+		GFF4254	0.80	-0.6
1,178,333	+		GFF4254	0.80	-1.4
1,178,333	+		GFF4254	0.80	+2.0
1,178,333	+		GFF4254	0.80	-1.8
1,178,333	+		GFF4254	0.80	-0.6
1,178,333	+		GFF4254	0.80	+0.4
1,178,333	+		GFF4254	0.80	-0.1
1,178,333	+		GFF4254	0.80	+0.0
1,178,333	+		GFF4254	0.80	-0.0
1,178,333	+		GFF4254	0.80	+0.1
1,178,333	+		GFF4254	0.80	-0.6
1,178,333	+		GFF4254	0.80	-0.1
1,178,334	-		GFF4254	0.80	+0.5
1,178,334	-		GFF4254	0.80	+0.6
1,178,334	-		GFF4254	0.80	-0.0
1,178,334	-		GFF4254	0.80	-0.7
1,178,334	-		GFF4254	0.80	+2.0
1,178,334	-		GFF4254	0.80	+0.2
1,178,334	-		GFF4254	0.80	+0.4
1,178,436	+				-0.7
1,178,437	-				-0.1
1,178,437	-				-0.1
1,178,459	+				-0.2
1,178,509	-				-0.0
1,178,509	-				+0.2
1,178,509	-				+0.5
1,178,509	-				+0.7
1,178,614	-				+0.1
1,178,720	+				-1.2
1,178,721	-				-0.2
1,178,721	-				-0.6
1,178,753	+				-0.7
1,178,753	+				-0.6
1,178,753	+				-0.0
1,178,753	+				-0.3
1,178,754	-				-1.2
1,178,754	-				-0.6
1,178,754	-				-0.0
1,179,089	+		GFF4255	0.37	-0.4
1,179,089	+		GFF4255	0.37	-0.6
1,179,089	+		GFF4255	0.37	-1.8
1,179,089	+		GFF4255	0.37	+1.7
1,179,089	+		GFF4255	0.37	-2.3
1,179,090	-		GFF4255	0.37	-1.5
1,179,090	-		GFF4255	0.37	-1.0
1,179,090	-		GFF4255	0.37	+0.5
1,179,090	-		GFF4255	0.37	-0.1
1,179,090	-		GFF4255	0.37	-0.4
1,179,090	-		GFF4255	0.37	+1.7
1,179,305	+		GFF4255	0.63	+1.0
1,179,306	-		GFF4255	0.63	-1.3
1,179,306	-		GFF4255	0.63	-1.0
1,179,306	-		GFF4255	0.63	-0.6
1,179,306	-		GFF4255	0.63	-0.3
1,179,407	+		GFF4255	0.75	-1.4
1,179,431	+		GFF4255	0.78	+2.0
1,179,431	+		GFF4255	0.78	-0.5
1,179,432	-		GFF4255	0.78	-0.5
1,179,432	-		GFF4255	0.78	-2.9
1,179,432	-		GFF4255	0.78	+0.8
1,179,432	-		GFF4255	0.78	-0.4
1,179,432	-		GFF4255	0.78	-0.9
1,179,432	-		GFF4255	0.78	-1.1
1,179,895	+		GFF4256	0.16	-0.6
1,180,195	+		GFF4256	0.34	-0.8
1,180,195	+		GFF4256	0.34	-0.2
1,180,195	+		GFF4256	0.34	-1.6
1,180,196	-		GFF4256	0.34	-0.9
1,180,421	-		GFF4256	0.48	-0.3
1,180,421	-		GFF4256	0.48	-0.8
1,180,421	-		GFF4256	0.48	-1.0
1,180,421	-		GFF4256	0.48	-0.7
1,180,421	-		GFF4256	0.48	+0.2
1,180,471	+		GFF4256	0.51	-0.0
1,180,471	+		GFF4256	0.51	+0.4
1,180,471	+		GFF4256	0.51	-0.3
1,180,471	+		GFF4256	0.51	-0.3
1,180,471	+		GFF4256	0.51	-0.7
1,180,471	+		GFF4256	0.51	+1.2
1,180,472	-		GFF4256	0.51	+0.3
1,180,472	-		GFF4256	0.51	-0.4
1,180,472	-		GFF4256	0.51	-0.6
1,180,472	-		GFF4256	0.51	-0.5
1,180,472	-		GFF4256	0.51	+0.4
1,180,472	-		GFF4256	0.51	-0.8
1,180,472	-		GFF4256	0.51	+0.2
1,180,472	-		GFF4256	0.51	-0.1
1,180,507	+		GFF4256	0.53	+0.3
1,180,507	+		GFF4256	0.53	-0.2
1,180,576	+		GFF4256	0.58	-0.7
1,180,577	-		GFF4256	0.58	-1.0
1,180,577	-		GFF4256	0.58	+0.3
1,180,615	+		GFF4256	0.60	-0.2