Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4242 and GFF4243 overlap by 4 nucleotides GFF4243 and GFF4244 overlap by 4 nucleotides
GFF4242 - Helicase, at 1,154,501 to 1,157,203
GFF4242
GFF4243 - ATP-dependent DNA helicase pcrA (EC 3.6.1.-), at 1,157,200 to 1,160,553
GFF4243
GFF4244 - NAD(FAD)-utilizing dehydrogenases, at 1,160,550 to 1,161,812
GFF4244
Position (kb) 1157
1158
1159
1160
1161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1156.425 kb on - strand, within GFF4242 at 1157.254 kb on + strand at 1157.255 kb on - strand at 1157.255 kb on - strand at 1157.669 kb on - strand, within GFF4243 at 1157.908 kb on + strand, within GFF4243 at 1157.908 kb on + strand, within GFF4243 at 1158.433 kb on + strand, within GFF4243 at 1158.517 kb on + strand, within GFF4243 at 1159.393 kb on + strand, within GFF4243 at 1159.394 kb on - strand, within GFF4243 at 1159.526 kb on - strand, within GFF4243 at 1159.832 kb on - strand, within GFF4243 at 1159.909 kb on + strand, within GFF4243 at 1160.389 kb on + strand at 1160.390 kb on - strand at 1160.390 kb on - strand at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.330 kb on + strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.331 kb on - strand, within GFF4244 at 1161.504 kb on + strand, within GFF4244
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 1,156,425 - GFF4242 0.71 -1.5 1,157,254 + -0.0 1,157,255 - -0.0 1,157,255 - -0.0 1,157,669 - GFF4243 0.14 -1.3 1,157,908 + GFF4243 0.21 +0.5 1,157,908 + GFF4243 0.21 -1.6 1,158,433 + GFF4243 0.37 +0.6 1,158,517 + GFF4243 0.39 -0.0 1,159,393 + GFF4243 0.65 -1.8 1,159,394 - GFF4243 0.65 -0.6 1,159,526 - GFF4243 0.69 -1.0 1,159,832 - GFF4243 0.78 -0.2 1,159,909 + GFF4243 0.81 -1.4 1,160,389 + +0.1 1,160,390 - -0.0 1,160,390 - -1.1 1,161,330 + GFF4244 0.62 +0.2 1,161,330 + GFF4244 0.62 +0.2 1,161,330 + GFF4244 0.62 -0.3 1,161,330 + GFF4244 0.62 +0.9 1,161,330 + GFF4244 0.62 -0.5 1,161,330 + GFF4244 0.62 +0.1 1,161,330 + GFF4244 0.62 +0.3 1,161,330 + GFF4244 0.62 -0.0 1,161,330 + GFF4244 0.62 -1.5 1,161,330 + GFF4244 0.62 -0.0 1,161,330 + GFF4244 0.62 +0.2 1,161,330 + GFF4244 0.62 +1.0 1,161,330 + GFF4244 0.62 +1.0 1,161,330 + GFF4244 0.62 -0.8 1,161,330 + GFF4244 0.62 +0.9 1,161,330 + GFF4244 0.62 +0.3 1,161,330 + GFF4244 0.62 +1.0 1,161,330 + GFF4244 0.62 +0.6 1,161,331 - GFF4244 0.62 -0.3 1,161,331 - GFF4244 0.62 +0.7 1,161,331 - GFF4244 0.62 +0.5 1,161,331 - GFF4244 0.62 +0.8 1,161,331 - GFF4244 0.62 +0.8 1,161,331 - GFF4244 0.62 +0.4 1,161,331 - GFF4244 0.62 +0.3 1,161,331 - GFF4244 0.62 -0.0 1,161,331 - GFF4244 0.62 +1.8 1,161,331 - GFF4244 0.62 -0.6 1,161,331 - GFF4244 0.62 -0.2 1,161,331 - GFF4244 0.62 -0.2 1,161,331 - GFF4244 0.62 -1.0 1,161,331 - GFF4244 0.62 -0.2 1,161,504 + GFF4244 0.76 -0.6
Or see this region's nucleotide sequence