Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3990 and GFF3991 are separated by 13 nucleotides GFF3991 and GFF3992 are separated by 64 nucleotides GFF3992 and GFF3993 are separated by 1 nucleotides
GFF3990 - hypothetical protein, at 906,607 to 906,792
GFF3990
GFF3991 - Predicted cobalt transporter CbtA, at 906,806 to 907,609
GFF3991
GFF3992 - Biotin synthase (EC 2.8.1.6), at 907,674 to 908,726
GFF3992
GFF3993 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 908,728 to 910,107
GFF3993
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1 at 906.710 kb on - strand, within GFF3990 at 906.920 kb on + strand, within GFF3991 at 906.920 kb on + strand, within GFF3991 at 906.920 kb on + strand, within GFF3991 at 906.920 kb on + strand, within GFF3991 at 906.921 kb on - strand, within GFF3991 at 907.380 kb on - strand, within GFF3991 at 907.380 kb on - strand, within GFF3991 at 907.673 kb on + strand at 907.673 kb on + strand at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.274 kb on + strand, within GFF3992 at 908.274 kb on + strand, within GFF3992 at 908.275 kb on - strand, within GFF3992 at 908.413 kb on - strand, within GFF3992 at 908.625 kb on + strand at 908.884 kb on + strand, within GFF3993 at 908.884 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.442 kb on + strand, within GFF3993 at 909.446 kb on + strand, within GFF3993 at 909.447 kb on - strand, within GFF3993 at 909.641 kb on - strand, within GFF3993 at 909.653 kb on - strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.695 kb on - strand, within GFF3993
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 906,710 - GFF3990 0.55 +0.3 906,920 + GFF3991 0.14 +0.4 906,920 + GFF3991 0.14 -0.7 906,920 + GFF3991 0.14 +1.0 906,920 + GFF3991 0.14 +0.1 906,921 - GFF3991 0.14 +0.3 907,380 - GFF3991 0.71 +0.8 907,380 - GFF3991 0.71 +0.2 907,673 + -0.6 907,673 + +1.0 908,214 + GFF3992 0.51 -0.8 908,214 + GFF3992 0.51 +0.9 908,214 + GFF3992 0.51 -0.1 908,214 + GFF3992 0.51 +0.4 908,214 + GFF3992 0.51 +0.3 908,215 - GFF3992 0.51 +0.4 908,215 - GFF3992 0.51 -0.3 908,215 - GFF3992 0.51 -0.8 908,215 - GFF3992 0.51 +0.6 908,215 - GFF3992 0.51 -0.1 908,215 - GFF3992 0.51 -0.4 908,274 + GFF3992 0.57 -0.8 908,274 + GFF3992 0.57 -0.6 908,275 - GFF3992 0.57 -0.3 908,413 - GFF3992 0.70 -0.7 908,625 + +0.1 908,884 + GFF3993 0.11 +0.1 908,884 + GFF3993 0.11 -0.8 909,238 + GFF3993 0.37 +0.3 909,238 + GFF3993 0.37 -0.6 909,238 + GFF3993 0.37 -0.3 909,238 + GFF3993 0.37 +0.3 909,239 - GFF3993 0.37 +1.0 909,239 - GFF3993 0.37 -0.0 909,239 - GFF3993 0.37 -0.5 909,442 + GFF3993 0.52 -0.0 909,446 + GFF3993 0.52 +0.1 909,447 - GFF3993 0.52 -0.0 909,641 - GFF3993 0.66 -0.4 909,653 - GFF3993 0.67 +0.4 909,694 + GFF3993 0.70 -0.5 909,694 + GFF3993 0.70 -0.3 909,694 + GFF3993 0.70 +0.0 909,695 - GFF3993 0.70 +1.0
Or see this region's nucleotide sequence