Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3981

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3979 and GFF3980 are separated by 11 nucleotidesGFF3980 and GFF3981 overlap by 4 nucleotidesGFF3981 and GFF3982 overlap by 4 nucleotidesGFF3982 and GFF3983 are separated by 25 nucleotides GFF3979 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 894,887 to 895,441 GFF3979 GFF3980 - Vitamin B12 ABC transporter, B12-binding component BtuF, at 895,453 to 896,322 GFF3980 GFF3981 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 896,319 to 897,323 GFF3981 GFF3982 - Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1), at 897,320 to 898,081 GFF3982 GFF3983 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 898,107 to 898,676 GFF3983 Position (kb) 896 897 898Strain fitness (log2 ratio) -1 0 1at 895.657 kb on + strand, within GFF3980at 895.979 kb on - strand, within GFF3980at 895.979 kb on - strand, within GFF3980at 896.104 kb on + strand, within GFF3980at 896.104 kb on + strand, within GFF3980at 897.274 kb on - strandat 898.267 kb on - strand, within GFF3983at 898.267 kb on - strand, within GFF3983at 898.267 kb on - strand, within GFF3983

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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895,657 + GFF3980 0.23 +0.1
895,979 - GFF3980 0.60 +0.7
895,979 - GFF3980 0.60 +1.4
896,104 + GFF3980 0.75 -0.0
896,104 + GFF3980 0.75 +1.1
897,274 - +0.4
898,267 - GFF3983 0.28 -0.0
898,267 - GFF3983 0.28 +0.1
898,267 - GFF3983 0.28 -0.5

Or see this region's nucleotide sequence