Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3829

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3828 and GFF3829 are separated by 207 nucleotidesGFF3829 and GFF3830 are separated by 194 nucleotides GFF3828 - UPF0028 protein YchK, at 736,694 to 737,497 GFF3828 GFF3829 - granule-associated protein, at 737,705 to 738,244 GFF3829 GFF3830 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 738,439 to 739,461 GFF3830 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 736.847 kb on + strand, within GFF3828at 736.848 kb on - strand, within GFF3828at 736.848 kb on - strand, within GFF3828at 736.973 kb on + strand, within GFF3828at 736.973 kb on + strand, within GFF3828at 736.974 kb on - strand, within GFF3828at 736.974 kb on - strand, within GFF3828at 737.156 kb on + strand, within GFF3828at 737.156 kb on + strand, within GFF3828at 737.157 kb on - strand, within GFF3828at 737.157 kb on - strand, within GFF3828at 737.196 kb on - strand, within GFF3828at 737.527 kb on - strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.637 kb on + strandat 737.638 kb on - strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.640 kb on + strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.641 kb on - strandat 737.706 kb on + strandat 737.706 kb on + strandat 737.991 kb on + strand, within GFF3829at 737.991 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.006 kb on + strand, within GFF3829at 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.247 kb on + strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.248 kb on - strandat 738.253 kb on + strandat 738.253 kb on + strandat 738.254 kb on - strandat 738.283 kb on + strandat 738.284 kb on - strandat 738.284 kb on - strandat 738.284 kb on - strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.364 kb on + strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.365 kb on - strandat 738.366 kb on + strandat 738.416 kb on + strandat 738.417 kb on - strandat 738.430 kb on + strandat 738.431 kb on - strandat 738.431 kb on - strandat 738.490 kb on + strandat 738.490 kb on + strandat 738.490 kb on + strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.491 kb on - strandat 738.493 kb on + strandat 738.494 kb on - strandat 738.494 kb on - strandat 738.655 kb on + strand, within GFF3830at 738.656 kb on - strand, within GFF3830at 738.656 kb on - strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.838 kb on + strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 738.839 kb on - strand, within GFF3830at 739.114 kb on + strand, within GFF3830at 739.115 kb on - strand, within GFF3830at 739.115 kb on - strand, within GFF3830at 739.180 kb on + strand, within GFF3830at 739.180 kb on + strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830at 739.181 kb on - strand, within GFF3830

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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736,847 + GFF3828 0.19 -0.2
736,848 - GFF3828 0.19 +1.0
736,848 - GFF3828 0.19 +0.0
736,973 + GFF3828 0.35 +0.0
736,973 + GFF3828 0.35 +0.7
736,974 - GFF3828 0.35 -0.2
736,974 - GFF3828 0.35 +0.7
737,156 + GFF3828 0.57 +0.2
737,156 + GFF3828 0.57 +0.1
737,157 - GFF3828 0.58 -0.3
737,157 - GFF3828 0.58 +0.7
737,196 - GFF3828 0.62 -0.1
737,527 - +0.0
737,637 + +0.1
737,637 + -0.2
737,637 + -0.5
737,637 + -0.2
737,638 - +0.4
737,640 + +1.3
737,640 + -0.2
737,640 + +1.0
737,640 + +0.1
737,640 + +0.6
737,641 - -0.9
737,641 - +0.4
737,641 - +2.0
737,641 - +1.0
737,706 + -0.1
737,706 + -0.3
737,991 + GFF3829 0.53 -3.2
737,991 + GFF3829 0.53 -2.7
738,006 + GFF3829 0.56 -1.0
738,006 + GFF3829 0.56 -1.2
738,006 + GFF3829 0.56 -1.7
738,247 + -1.0
738,247 + -3.3
738,247 + -2.0
738,247 + -0.0
738,247 + -2.1
738,247 + -2.2
738,247 + -1.9
738,247 + -0.0
738,247 + -2.8
738,247 + -2.7
738,247 + -2.7
738,247 + -3.8
738,248 - -2.5
738,248 - -0.6
738,248 - -2.0
738,248 - -2.8
738,248 - -2.0
738,248 - -1.8
738,248 - -1.0
738,248 - +0.7
738,248 - -2.5
738,248 - -0.4
738,253 + -1.6
738,253 + -2.1
738,254 - -1.2
738,283 + -1.6
738,284 - +0.7
738,284 - +1.0
738,284 - -1.3
738,364 + -2.0
738,364 + -3.9
738,364 + -0.0
738,364 + -1.6
738,365 - -0.8
738,365 - -1.7
738,365 - -2.0
738,365 - -0.0
738,366 + -2.4
738,416 + +0.2
738,417 - +0.3
738,430 + -1.3
738,431 - +0.1
738,431 - -1.1
738,490 + +0.4
738,490 + +1.0
738,490 + -0.1
738,491 - +0.6
738,491 - -0.0
738,491 - -0.0
738,491 - -0.7
738,491 - -0.1
738,493 + -0.3
738,494 - -0.3
738,494 - -0.3
738,655 + GFF3830 0.21 +0.7
738,656 - GFF3830 0.21 +0.2
738,656 - GFF3830 0.21 +0.2
738,838 + GFF3830 0.39 -0.3
738,838 + GFF3830 0.39 +0.8
738,838 + GFF3830 0.39 +0.8
738,839 - GFF3830 0.39 +0.6
738,839 - GFF3830 0.39 -0.2
738,839 - GFF3830 0.39 -0.6
738,839 - GFF3830 0.39 +0.4
739,114 + GFF3830 0.66 -0.3
739,115 - GFF3830 0.66 +0.8
739,115 - GFF3830 0.66 -1.3
739,180 + GFF3830 0.72 -0.1
739,180 + GFF3830 0.72 +0.5
739,181 - GFF3830 0.73 -1.3
739,181 - GFF3830 0.73 -0.1
739,181 - GFF3830 0.73 +1.0
739,181 - GFF3830 0.73 -0.2
739,181 - GFF3830 0.73 -0.7
739,181 - GFF3830 0.73 +0.8

Or see this region's nucleotide sequence