Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3800 and GFF3801 are separated by 2 nucleotides GFF3801 and GFF3802 are separated by 1 nucleotides GFF3802 and GFF3803 are separated by 1 nucleotides GFF3803 and GFF3804 are separated by 1 nucleotides
GFF3800 - 2-pyrone-4,6-dicarboxylic acid hydrolase, at 699,869 to 700,801
GFF3800
GFF3801 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 700,804 to 701,229
GFF3801
GFF3802 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 701,231 to 702,097
GFF3802
GFF3803 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase, at 702,099 to 703,058
GFF3803
GFF3804 - Chromosome segregation ATPases-like protein, at 703,060 to 703,734
GFF3804
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1
2 at 700.355 kb on + strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 700.356 kb on - strand, within GFF3800 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.041 kb on + strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.042 kb on - strand, within GFF3801 at 701.255 kb on + strand at 701.256 kb on - strand at 701.256 kb on - strand at 701.315 kb on + strand at 701.315 kb on + strand at 701.340 kb on - strand, within GFF3802 at 701.397 kb on - strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.772 kb on - strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.931 kb on - strand, within GFF3802 at 702.041 kb on + strand at 702.041 kb on + strand at 702.041 kb on + strand at 702.042 kb on - strand at 702.042 kb on - strand at 702.098 kb on + strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.244 kb on - strand, within GFF3803 at 702.498 kb on + strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.558 kb on + strand, within GFF3803 at 702.559 kb on - strand, within GFF3803 at 702.819 kb on + strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.862 kb on - strand, within GFF3803 at 703.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 700,355 + GFF3800 0.52 +0.3 700,356 - GFF3800 0.52 -1.7 700,356 - GFF3800 0.52 -1.2 701,041 + GFF3801 0.56 -0.1 701,041 + GFF3801 0.56 -0.3 701,041 + GFF3801 0.56 -1.5 701,042 - GFF3801 0.56 +0.3 701,042 - GFF3801 0.56 +0.5 701,042 - GFF3801 0.56 +0.3 701,255 + +0.3 701,256 - +0.6 701,256 - -0.6 701,315 + +0.4 701,315 + -0.4 701,340 - GFF3802 0.13 -0.3 701,397 - GFF3802 0.19 +0.5 701,465 + GFF3802 0.27 -0.2 701,465 + GFF3802 0.27 +2.0 701,732 + GFF3802 0.58 -0.2 701,732 + GFF3802 0.58 +0.5 701,732 + GFF3802 0.58 -0.8 701,733 - GFF3802 0.58 +1.0 701,733 - GFF3802 0.58 +0.7 701,733 - GFF3802 0.58 -0.2 701,733 - GFF3802 0.58 -0.3 701,733 - GFF3802 0.58 -0.1 701,733 - GFF3802 0.58 +1.8 701,771 + GFF3802 0.62 +0.1 701,771 + GFF3802 0.62 -1.0 701,772 - GFF3802 0.62 +0.1 701,930 + GFF3802 0.81 -0.0 701,930 + GFF3802 0.81 +0.4 701,931 - GFF3802 0.81 +0.8 702,041 + -0.0 702,041 + -0.7 702,041 + -0.2 702,042 - -0.2 702,042 - -0.2 702,098 + +0.7 702,099 - -0.4 702,099 - +0.1 702,099 - -0.3 702,244 - GFF3803 0.15 -1.0 702,498 + GFF3803 0.42 -1.5 702,499 - GFF3803 0.42 -0.6 702,499 - GFF3803 0.42 -1.6 702,558 + GFF3803 0.48 -1.2 702,559 - GFF3803 0.48 -0.0 702,819 + GFF3803 0.75 -0.3 702,820 - GFF3803 0.75 -1.1 702,820 - GFF3803 0.75 -2.0 702,820 - GFF3803 0.75 -2.7 702,820 - GFF3803 0.75 -1.6 702,849 + GFF3803 0.78 -0.6 702,849 + GFF3803 0.78 -0.7 702,850 - GFF3803 0.78 -0.0 702,850 - GFF3803 0.78 -0.3 702,850 - GFF3803 0.78 -0.0 702,850 - GFF3803 0.78 -1.4 702,862 - GFF3803 0.79 -1.6 703,014 + -1.0
Or see this region's nucleotide sequence