Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3725 and GFF3726 are separated by 36 nucleotides GFF3726 and GFF3727 are separated by 171 nucleotides GFF3727 and GFF3728 are separated by 229 nucleotides
GFF3725 - hypothetical protein, at 619,092 to 621,872
GFF3725
GFF3726 - hypothetical protein, at 621,909 to 622,412
GFF3726
GFF3727 - Membrane-associated phospholipid phosphatase, at 622,584 to 623,393
GFF3727
GFF3728 - Protein of unknown function DUF1428, at 623,623 to 623,991
GFF3728
Position (kb) 622
623
624 Strain fitness (log2 ratio) -1
0
1 at 621.625 kb on - strand at 621.625 kb on - strand at 622.249 kb on + strand, within GFF3726 at 622.249 kb on + strand, within GFF3726 at 622.250 kb on - strand, within GFF3726 at 622.460 kb on + strand at 622.461 kb on + strand at 622.461 kb on + strand at 622.461 kb on + strand at 622.586 kb on - strand at 622.789 kb on + strand, within GFF3727 at 622.789 kb on + strand, within GFF3727 at 622.789 kb on + strand, within GFF3727 at 622.804 kb on + strand, within GFF3727 at 622.846 kb on + strand, within GFF3727 at 622.847 kb on - strand, within GFF3727 at 623.479 kb on + strand at 623.479 kb on + strand at 623.480 kb on - strand at 623.480 kb on - strand at 623.518 kb on - strand at 623.571 kb on + strand at 623.571 kb on + strand at 623.571 kb on + strand at 623.571 kb on + strand at 623.572 kb on - strand at 623.622 kb on + strand at 623.622 kb on + strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.623 kb on - strand at 623.629 kb on + strand at 623.629 kb on + strand at 623.630 kb on - strand at 623.630 kb on - strand at 623.630 kb on - strand at 623.630 kb on - strand at 623.630 kb on - strand at 623.727 kb on + strand, within GFF3728 at 623.875 kb on + strand, within GFF3728 at 624.087 kb on + strand at 624.087 kb on + strand at 624.088 kb on - strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.128 kb on + strand at 624.129 kb on - strand at 624.129 kb on - strand at 624.129 kb on - strand at 624.129 kb on - strand at 624.129 kb on - strand at 624.129 kb on - strand at 624.140 kb on + strand at 624.219 kb on + strand at 624.220 kb on - strand at 624.220 kb on - strand at 624.293 kb on + strand at 624.293 kb on + strand at 624.294 kb on - strand at 624.305 kb on - strand at 624.305 kb on - strand at 624.305 kb on - strand at 624.338 kb on + strand at 624.338 kb on + strand at 624.338 kb on + strand at 624.339 kb on - strand at 624.339 kb on - strand at 624.339 kb on - strand at 624.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 621,625 - -0.3 621,625 - -0.2 622,249 + GFF3726 0.67 -0.2 622,249 + GFF3726 0.67 +0.6 622,250 - GFF3726 0.68 +1.0 622,460 + +0.7 622,461 + +1.0 622,461 + +1.0 622,461 + -0.1 622,586 - -0.2 622,789 + GFF3727 0.25 -0.3 622,789 + GFF3727 0.25 +1.1 622,789 + GFF3727 0.25 -0.9 622,804 + GFF3727 0.27 +0.6 622,846 + GFF3727 0.32 +1.1 622,847 - GFF3727 0.32 +0.7 623,479 + -0.1 623,479 + -0.1 623,480 - -0.2 623,480 - +0.1 623,518 - +1.0 623,571 + -0.3 623,571 + +0.6 623,571 + -0.1 623,571 + -0.5 623,572 - +0.3 623,622 + -0.5 623,622 + +0.6 623,623 - -0.0 623,623 - -0.1 623,623 - -0.6 623,623 - -0.9 623,623 - +0.3 623,623 - -0.3 623,623 - +1.6 623,623 - +0.3 623,623 - +0.3 623,623 - -0.4 623,629 + +0.1 623,629 + +0.2 623,630 - +0.0 623,630 - -0.5 623,630 - -0.5 623,630 - -0.2 623,630 - -0.6 623,727 + GFF3728 0.28 +1.1 623,875 + GFF3728 0.68 -0.4 624,087 + +0.0 624,087 + +0.2 624,088 - -0.0 624,128 + -0.2 624,128 + -0.3 624,128 + +0.0 624,128 + -0.2 624,128 + +0.2 624,128 + +0.1 624,128 + +0.6 624,128 + +0.5 624,128 + -0.2 624,129 - +0.3 624,129 - -1.0 624,129 - -0.0 624,129 - -0.3 624,129 - -0.1 624,129 - +0.0 624,140 + +0.4 624,219 + -0.5 624,220 - -0.1 624,220 - -1.6 624,293 + +0.7 624,293 + -0.1 624,294 - -0.3 624,305 - +0.1 624,305 - +0.3 624,305 - -0.2 624,338 + +0.2 624,338 + -0.2 624,338 + -0.4 624,339 - -0.3 624,339 - -0.2 624,339 - +0.2 624,339 - +0.1
Or see this region's nucleotide sequence