Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3629 and GFF3630 are separated by 48 nucleotides GFF3630 and GFF3631 overlap by 4 nucleotides GFF3631 and GFF3632 are separated by 84 nucleotides GFF3632 and GFF3633 are separated by 115 nucleotides GFF3633 and GFF3634 are separated by 140 nucleotides
GFF3629 - Metallo-beta-lactamase family protein, at 515,452 to 516,576
GFF3629
GFF3630 - ortholog of Bordetella pertussis (BX470248) BP1188, at 516,625 to 517,509
GFF3630
GFF3631 - Universal stress protein family 4, at 517,506 to 518,375
GFF3631
GFF3632 - Regulator of nucleoside diphosphate kinase, at 518,460 to 518,861
GFF3632
GFF3633 - hypothetical protein, at 518,977 to 519,102
GFF3633
GFF3634 - hypothetical protein, at 519,243 to 519,449
GFF3634
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.512 kb on + strand at 517.406 kb on + strand, within GFF3630 at 517.406 kb on + strand, within GFF3630 at 517.407 kb on - strand, within GFF3630 at 517.407 kb on - strand, within GFF3630 at 517.407 kb on - strand, within GFF3630 at 517.700 kb on - strand, within GFF3631 at 517.978 kb on + strand, within GFF3631 at 517.979 kb on - strand, within GFF3631 at 518.059 kb on + strand, within GFF3631 at 518.060 kb on - strand, within GFF3631 at 518.461 kb on + strand at 518.462 kb on - strand at 518.462 kb on - strand at 518.641 kb on + strand, within GFF3632 at 518.642 kb on - strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.935 kb on + strand at 518.935 kb on + strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 519.109 kb on + strand at 519.109 kb on + strand at 519.110 kb on - strand at 519.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 516,512 + +0.9 517,406 + GFF3630 0.88 +0.1 517,406 + GFF3630 0.88 -0.2 517,407 - GFF3630 0.88 -0.3 517,407 - GFF3630 0.88 -0.1 517,407 - GFF3630 0.88 +0.3 517,700 - GFF3631 0.22 +0.9 517,978 + GFF3631 0.54 -0.6 517,979 - GFF3631 0.54 -0.4 518,059 + GFF3631 0.64 -0.5 518,060 - GFF3631 0.64 +0.1 518,461 + -0.2 518,462 - -0.1 518,462 - +1.8 518,641 + GFF3632 0.45 -0.5 518,642 - GFF3632 0.45 +0.9 518,701 + GFF3632 0.60 -0.2 518,701 + GFF3632 0.60 -0.1 518,702 - GFF3632 0.60 -0.4 518,702 - GFF3632 0.60 -0.4 518,935 + -0.6 518,935 + -1.1 518,936 - +0.5 518,936 - -0.3 518,936 - +0.4 518,936 - -0.0 518,979 - -2.5 518,979 - -0.4 518,979 - +1.3 518,979 - +0.1 519,109 + +0.2 519,109 + +0.6 519,110 - +1.4 519,110 - +0.2
Or see this region's nucleotide sequence