Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3323 and GFF3324 are separated by 4 nucleotides GFF3324 and GFF3325 overlap by 12 nucleotides GFF3325 and GFF3326 are separated by 74 nucleotides
GFF3323 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 208,784 to 209,815
GFF3323
GFF3324 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 209,820 to 211,205
GFF3324
GFF3325 - hypothetical protein, at 211,194 to 211,322
GFF3325
GFF3326 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 211,397 to 212,281
GFF3326
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 209.103 kb on + strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.136 kb on + strand, within GFF3323 at 209.137 kb on - strand, within GFF3323 at 209.148 kb on + strand, within GFF3323 at 209.149 kb on - strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.272 kb on - strand, within GFF3323 at 209.355 kb on + strand, within GFF3323 at 209.356 kb on - strand, within GFF3323 at 209.416 kb on - strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.784 kb on + strand at 209.784 kb on + strand at 209.785 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.854 kb on + strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.894 kb on - strand at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.805 kb on + strand, within GFF3324 at 210.806 kb on - strand, within GFF3324 at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.415 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.417 kb on - strand at 211.511 kb on + strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.530 kb on - strand, within GFF3326 at 211.608 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.981 kb on - strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.114 kb on - strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.172 kb on - strand, within GFF3326
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 208,944 + GFF3323 0.16 +1.9 208,944 + GFF3323 0.16 +0.9 208,944 + GFF3323 0.16 +0.3 208,945 - GFF3323 0.16 +0.7 208,945 - GFF3323 0.16 +1.0 209,103 + GFF3323 0.31 +0.8 209,104 - GFF3323 0.31 +0.7 209,104 - GFF3323 0.31 +0.7 209,136 + GFF3323 0.34 +0.8 209,137 - GFF3323 0.34 +0.6 209,148 + GFF3323 0.35 +0.2 209,149 - GFF3323 0.35 -0.8 209,193 + GFF3323 0.40 +0.8 209,193 + GFF3323 0.40 -0.0 209,194 - GFF3323 0.40 +0.1 209,194 - GFF3323 0.40 -0.0 209,194 - GFF3323 0.40 +1.2 209,272 - GFF3323 0.47 -0.1 209,355 + GFF3323 0.55 +0.5 209,356 - GFF3323 0.55 +0.2 209,416 - GFF3323 0.61 +0.4 209,529 + GFF3323 0.72 +0.2 209,529 + GFF3323 0.72 +0.2 209,530 - GFF3323 0.72 +0.2 209,530 - GFF3323 0.72 -0.2 209,530 - GFF3323 0.72 +1.2 209,530 - GFF3323 0.72 -0.4 209,784 + +0.1 209,784 + -0.1 209,785 - -0.3 209,821 + -0.5 209,821 + +0.6 209,821 + -0.1 209,854 + -0.6 209,855 - -0.4 209,855 - -0.6 209,855 - -0.3 209,855 - -1.4 209,855 - +0.1 209,855 - -0.6 209,855 - -1.0 209,893 + -3.6 209,893 + -1.3 209,893 + -5.7 209,894 - -6.7 209,974 + GFF3324 0.11 -3.8 209,974 + GFF3324 0.11 -4.9 209,974 + GFF3324 0.11 -0.7 209,974 + GFF3324 0.11 -6.4 209,974 + GFF3324 0.11 -4.7 209,974 + GFF3324 0.11 -2.6 209,975 - GFF3324 0.11 -3.4 209,975 - GFF3324 0.11 -5.0 209,975 - GFF3324 0.11 -1.7 209,975 - GFF3324 0.11 -4.8 209,975 - GFF3324 0.11 -3.3 210,001 + GFF3324 0.13 -5.6 210,001 + GFF3324 0.13 -4.8 210,001 + GFF3324 0.13 -3.6 210,001 + GFF3324 0.13 -1.7 210,001 + GFF3324 0.13 -3.3 210,001 + GFF3324 0.13 -4.0 210,001 + GFF3324 0.13 -4.8 210,002 - GFF3324 0.13 -5.7 210,002 - GFF3324 0.13 -2.7 210,002 - GFF3324 0.13 -2.9 210,002 - GFF3324 0.13 -6.1 210,002 - GFF3324 0.13 -1.1 210,151 + GFF3324 0.24 -1.9 210,151 + GFF3324 0.24 -2.4 210,152 - GFF3324 0.24 -3.3 210,152 - GFF3324 0.24 -5.0 210,502 + GFF3324 0.49 -3.5 210,502 + GFF3324 0.49 -3.4 210,799 + GFF3324 0.71 -3.3 210,799 + GFF3324 0.71 -3.1 210,799 + GFF3324 0.71 -6.1 210,799 + GFF3324 0.71 -3.2 210,800 - GFF3324 0.71 -1.1 210,800 - GFF3324 0.71 -5.7 210,805 + GFF3324 0.71 -6.7 210,806 - GFF3324 0.71 -5.9 211,321 - -0.0 211,321 - -0.1 211,321 - +0.8 211,321 - +0.9 211,415 + -3.7 211,416 + -5.9 211,416 + -2.6 211,416 + -2.1 211,416 + -5.8 211,416 + -1.4 211,417 - -3.7 211,511 + GFF3326 0.13 -2.1 211,512 - GFF3326 0.13 -4.0 211,512 - GFF3326 0.13 -1.1 211,529 + GFF3326 0.15 -2.3 211,529 + GFF3326 0.15 -2.1 211,530 - GFF3326 0.15 -4.2 211,608 - GFF3326 0.24 -3.0 211,698 - GFF3326 0.34 -1.9 211,698 - GFF3326 0.34 -4.6 211,698 - GFF3326 0.34 -4.7 211,698 - GFF3326 0.34 -3.2 211,698 - GFF3326 0.34 -5.0 211,859 + GFF3326 0.52 -3.5 211,859 + GFF3326 0.52 -4.7 211,859 + GFF3326 0.52 -2.9 211,859 + GFF3326 0.52 -2.8 211,860 - GFF3326 0.52 -3.5 211,860 - GFF3326 0.52 -4.2 211,860 - GFF3326 0.52 -3.7 211,860 - GFF3326 0.52 -3.7 211,860 - GFF3326 0.52 -5.3 211,980 + GFF3326 0.66 -2.0 211,980 + GFF3326 0.66 -5.3 211,981 - GFF3326 0.66 -2.6 212,033 + GFF3326 0.72 -5.3 212,033 + GFF3326 0.72 -4.4 212,033 + GFF3326 0.72 -3.8 212,033 + GFF3326 0.72 -2.3 212,033 + GFF3326 0.72 -3.7 212,034 - GFF3326 0.72 -2.6 212,034 - GFF3326 0.72 -6.0 212,034 - GFF3326 0.72 -2.6 212,034 - GFF3326 0.72 -2.1 212,114 - GFF3326 0.81 -3.9 212,171 + GFF3326 0.87 -7.0 212,171 + GFF3326 0.87 -1.1 212,172 - GFF3326 0.88 -5.9
Or see this region's nucleotide sequence