Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3095 and GFF3096 are separated by 75 nucleotides GFF3096 and GFF3097 are separated by 22 nucleotides GFF3097 and GFF3098 are separated by 2 nucleotides
GFF3095 - ApaG protein, at 173,055 to 173,459
GFF3095
GFF3096 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 173,535 to 174,218
GFF3096
GFF3097 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 174,241 to 175,071
GFF3097
GFF3098 - putative exported protein, at 175,074 to 176,042
GFF3098
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1 at 173.362 kb on + strand, within GFF3095 at 173.363 kb on - strand, within GFF3095 at 173.363 kb on - strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.441 kb on - strand at 173.441 kb on - strand at 173.441 kb on - strand at 173.462 kb on + strand at 173.462 kb on + strand at 173.463 kb on - strand at 174.374 kb on + strand, within GFF3097 at 174.375 kb on - strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.399 kb on - strand, within GFF3097 at 174.399 kb on - strand, within GFF3097 at 174.599 kb on + strand, within GFF3097 at 174.599 kb on + strand, within GFF3097 at 174.600 kb on - strand, within GFF3097 at 174.693 kb on - strand, within GFF3097 at 174.693 kb on - strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.947 kb on + strand, within GFF3097 at 174.948 kb on - strand, within GFF3097 at 174.948 kb on - strand, within GFF3097 at 175.720 kb on + strand, within GFF3098 at 175.721 kb on - strand, within GFF3098 at 175.784 kb on - strand, within GFF3098 at 175.810 kb on + strand, within GFF3098 at 176.055 kb on - strand at 176.058 kb on + strand at 176.059 kb on - strand at 176.059 kb on - strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.060 kb on + strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.061 kb on - strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.064 kb on + strand at 176.065 kb on - strand at 176.065 kb on - strand at 176.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 173,362 + GFF3095 0.76 +0.3 173,363 - GFF3095 0.76 -0.1 173,363 - GFF3095 0.76 -0.5 173,374 + GFF3095 0.79 +0.3 173,374 + GFF3095 0.79 -0.1 173,374 + GFF3095 0.79 -0.3 173,375 - GFF3095 0.79 -0.7 173,375 - GFF3095 0.79 +0.2 173,375 - GFF3095 0.79 +0.6 173,375 - GFF3095 0.79 -1.1 173,375 - GFF3095 0.79 +0.0 173,440 + +0.4 173,440 + -1.4 173,440 + +0.0 173,440 + -0.4 173,440 + +0.1 173,441 - -1.9 173,441 - -0.1 173,441 - +0.6 173,462 + +0.9 173,462 + +0.6 173,463 - +0.0 174,374 + GFF3097 0.16 -0.4 174,375 - GFF3097 0.16 +0.1 174,398 + GFF3097 0.19 -1.1 174,398 + GFF3097 0.19 -0.1 174,398 + GFF3097 0.19 +0.3 174,399 - GFF3097 0.19 -0.6 174,399 - GFF3097 0.19 -0.6 174,599 + GFF3097 0.43 -0.2 174,599 + GFF3097 0.43 -0.2 174,600 - GFF3097 0.43 -0.1 174,693 - GFF3097 0.54 -0.4 174,693 - GFF3097 0.54 -0.7 174,947 + GFF3097 0.85 -0.3 174,947 + GFF3097 0.85 +0.5 174,947 + GFF3097 0.85 -1.0 174,947 + GFF3097 0.85 -0.4 174,947 + GFF3097 0.85 -0.2 174,947 + GFF3097 0.85 +0.3 174,948 - GFF3097 0.85 -0.6 174,948 - GFF3097 0.85 -1.5 175,720 + GFF3098 0.67 -0.1 175,721 - GFF3098 0.67 +0.3 175,784 - GFF3098 0.73 -0.1 175,810 + GFF3098 0.76 -1.5 176,055 - -0.4 176,058 + +1.5 176,059 - +0.7 176,059 - +0.3 176,060 + +0.9 176,060 + -0.0 176,060 + +0.5 176,060 + -0.1 176,060 + +0.6 176,060 + -0.2 176,061 - -0.1 176,061 - -0.1 176,061 - -0.1 176,061 - -1.3 176,061 - -0.6 176,061 - -0.7 176,064 + +0.4 176,064 + -0.5 176,064 + +0.9 176,064 + -0.4 176,064 + -1.1 176,064 + +0.8 176,064 + +0.1 176,064 + +0.9 176,065 - -0.2 176,065 - +0.9 176,070 + +0.2
Or see this region's nucleotide sequence