Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3039 and GFF3040 are separated by 6 nucleotides GFF3040 and GFF3041 are separated by 348 nucleotides
GFF3039 - hypothetical protein, at 115,563 to 119,090
GFF3039
GFF3040 - Malate synthase G (EC 2.3.3.9), at 119,097 to 121,307
GFF3040
GFF3041 - Outer membrane protein (porin), at 121,656 to 122,759
GFF3041
Position (kb)
119
120
121
122 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 118.398 kb on + strand, within GFF3039 at 118.398 kb on + strand, within GFF3039 at 118.398 kb on + strand, within GFF3039 at 118.398 kb on + strand, within GFF3039 at 118.398 kb on + strand, within GFF3039 at 118.398 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.401 kb on + strand, within GFF3039 at 118.402 kb on - strand, within GFF3039 at 118.402 kb on - strand, within GFF3039 at 118.476 kb on + strand, within GFF3039 at 118.476 kb on + strand, within GFF3039 at 118.476 kb on + strand, within GFF3039 at 118.476 kb on + strand, within GFF3039 at 118.476 kb on + strand, within GFF3039 at 118.477 kb on - strand, within GFF3039 at 118.477 kb on - strand, within GFF3039 at 118.490 kb on + strand, within GFF3039 at 118.533 kb on + strand, within GFF3039 at 118.533 kb on + strand, within GFF3039 at 118.533 kb on + strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.534 kb on - strand, within GFF3039 at 118.790 kb on + strand at 118.790 kb on + strand at 118.790 kb on + strand at 118.790 kb on + strand at 118.790 kb on + strand at 118.790 kb on + strand at 118.791 kb on + strand at 118.791 kb on - strand at 118.791 kb on - strand at 118.791 kb on - strand at 118.791 kb on - strand at 118.871 kb on - strand at 118.943 kb on + strand at 118.943 kb on + strand at 118.943 kb on + strand at 118.944 kb on - strand at 118.944 kb on - strand at 118.944 kb on - strand at 118.944 kb on - strand at 119.088 kb on + strand at 119.088 kb on + strand at 119.088 kb on + strand at 119.089 kb on - strand at 119.146 kb on + strand at 119.146 kb on + strand at 119.237 kb on - strand at 119.237 kb on - strand at 119.449 kb on + strand, within GFF3040 at 119.449 kb on + strand, within GFF3040 at 119.449 kb on + strand, within GFF3040 at 119.812 kb on + strand, within GFF3040 at 119.812 kb on + strand, within GFF3040 at 119.812 kb on + strand, within GFF3040 at 119.812 kb on + strand, within GFF3040 at 119.812 kb on + strand, within GFF3040 at 119.813 kb on - strand, within GFF3040 at 119.813 kb on - strand, within GFF3040 at 120.106 kb on + strand, within GFF3040 at 120.107 kb on - strand, within GFF3040 at 120.334 kb on + strand, within GFF3040 at 120.335 kb on - strand, within GFF3040 at 120.335 kb on - strand, within GFF3040 at 120.335 kb on - strand, within GFF3040 at 120.335 kb on - strand, within GFF3040 at 120.430 kb on + strand, within GFF3040 at 120.634 kb on + strand, within GFF3040 at 120.788 kb on - strand, within GFF3040 at 120.788 kb on - strand, within GFF3040 at 120.788 kb on - strand, within GFF3040 at 120.821 kb on - strand, within GFF3040 at 120.881 kb on - strand, within GFF3040 at 120.892 kb on + strand, within GFF3040 at 120.931 kb on + strand, within GFF3040 at 120.931 kb on + strand, within GFF3040 at 121.039 kb on + strand, within GFF3040 at 121.361 kb on + strand at 121.361 kb on + strand at 121.361 kb on + strand at 121.362 kb on - strand at 121.362 kb on - strand at 121.372 kb on + strand at 121.372 kb on + strand at 121.372 kb on + strand at 121.372 kb on + strand at 121.373 kb on - strand at 121.373 kb on - strand at 121.394 kb on + strand at 121.395 kb on - strand at 121.435 kb on + strand at 121.435 kb on + strand at 121.436 kb on - strand at 121.471 kb on + strand at 121.472 kb on - strand at 121.472 kb on - strand at 121.472 kb on - strand at 121.511 kb on + strand at 121.512 kb on - strand at 121.560 kb on - strand at 121.694 kb on + strand at 121.694 kb on + strand at 121.695 kb on - strand at 121.695 kb on - strand at 121.695 kb on - strand at 121.699 kb on + strand at 121.699 kb on + strand at 121.699 kb on + strand at 121.699 kb on + strand at 121.699 kb on + strand at 121.699 kb on + strand at 121.700 kb on - strand at 121.700 kb on - strand at 121.791 kb on + strand, within GFF3041 at 121.791 kb on + strand, within GFF3041 at 121.792 kb on - strand, within GFF3041 at 121.792 kb on - strand, within GFF3041 at 121.792 kb on - strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.809 kb on + strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.810 kb on - strand, within GFF3041 at 121.835 kb on + strand, within GFF3041 at 121.836 kb on - strand, within GFF3041 at 121.836 kb on - strand, within GFF3041 at 121.844 kb on + strand, within GFF3041 at 121.976 kb on - strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.071 kb on - strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 118,398 + GFF3039 0.80 +0.7 118,398 + GFF3039 0.80 -1.1 118,398 + GFF3039 0.80 -0.1 118,398 + GFF3039 0.80 -1.4 118,398 + GFF3039 0.80 +0.5 118,398 + GFF3039 0.80 -0.0 118,401 + GFF3039 0.80 -0.4 118,401 + GFF3039 0.80 +1.2 118,401 + GFF3039 0.80 +1.7 118,401 + GFF3039 0.80 -0.1 118,401 + GFF3039 0.80 -0.7 118,401 + GFF3039 0.80 +0.3 118,401 + GFF3039 0.80 +0.2 118,401 + GFF3039 0.80 +0.5 118,401 + GFF3039 0.80 +0.5 118,402 - GFF3039 0.80 +0.2 118,402 - GFF3039 0.80 -0.1 118,476 + GFF3039 0.83 -0.4 118,476 + GFF3039 0.83 +0.5 118,476 + GFF3039 0.83 -0.2 118,476 + GFF3039 0.83 -1.7 118,476 + GFF3039 0.83 -0.1 118,477 - GFF3039 0.83 -0.5 118,477 - GFF3039 0.83 +0.5 118,490 + GFF3039 0.83 -0.6 118,533 + GFF3039 0.84 -0.7 118,533 + GFF3039 0.84 +0.2 118,533 + GFF3039 0.84 +0.2 118,534 - GFF3039 0.84 +0.3 118,534 - GFF3039 0.84 +0.1 118,534 - GFF3039 0.84 +0.1 118,534 - GFF3039 0.84 -0.5 118,534 - GFF3039 0.84 -0.7 118,534 - GFF3039 0.84 -0.1 118,790 + +0.9 118,790 + -0.1 118,790 + +1.9 118,790 + +0.1 118,790 + +0.9 118,790 + -0.0 118,791 + +0.0 118,791 - -0.4 118,791 - +0.1 118,791 - +0.7 118,791 - +0.3 118,871 - +0.1 118,943 + +0.7 118,943 + +1.8 118,943 + -0.5 118,944 - -0.4 118,944 - +0.9 118,944 - +0.7 118,944 - -1.0 119,088 + -0.1 119,088 + +0.4 119,088 + +0.4 119,089 - -0.2 119,146 + -6.7 119,146 + -2.9 119,237 - -1.7 119,237 - -1.7 119,449 + GFF3040 0.16 -2.5 119,449 + GFF3040 0.16 -1.1 119,449 + GFF3040 0.16 -4.2 119,812 + GFF3040 0.32 -4.2 119,812 + GFF3040 0.32 -1.1 119,812 + GFF3040 0.32 -5.4 119,812 + GFF3040 0.32 -2.4 119,812 + GFF3040 0.32 -2.5 119,813 - GFF3040 0.32 -4.0 119,813 - GFF3040 0.32 -2.8 120,106 + GFF3040 0.46 +0.9 120,107 - GFF3040 0.46 -3.5 120,334 + GFF3040 0.56 -2.9 120,335 - GFF3040 0.56 -1.1 120,335 - GFF3040 0.56 -2.4 120,335 - GFF3040 0.56 -4.4 120,335 - GFF3040 0.56 -1.9 120,430 + GFF3040 0.60 -1.9 120,634 + GFF3040 0.70 -3.1 120,788 - GFF3040 0.76 -3.5 120,788 - GFF3040 0.76 -3.1 120,788 - GFF3040 0.76 -1.1 120,821 - GFF3040 0.78 -1.4 120,881 - GFF3040 0.81 -1.9 120,892 + GFF3040 0.81 -0.1 120,931 + GFF3040 0.83 -6.6 120,931 + GFF3040 0.83 -3.2 121,039 + GFF3040 0.88 -1.7 121,361 + -0.4 121,361 + -1.8 121,361 + -2.2 121,362 - +0.1 121,362 - -0.3 121,372 + -0.1 121,372 + -0.5 121,372 + -0.1 121,372 + -0.1 121,373 - +1.2 121,373 - +0.3 121,394 + +0.1 121,395 - +0.5 121,435 + -1.2 121,435 + +2.5 121,436 - -0.1 121,471 + +0.4 121,472 - -0.0 121,472 - +0.6 121,472 - -0.1 121,511 + -0.5 121,512 - +0.3 121,560 - -0.2 121,694 + +0.7 121,694 + +0.5 121,695 - -0.5 121,695 - -0.0 121,695 - -0.1 121,699 + +0.4 121,699 + +0.2 121,699 + -0.5 121,699 + +0.0 121,699 + +0.2 121,699 + -0.1 121,700 - +1.5 121,700 - -0.7 121,791 + GFF3041 0.12 +1.4 121,791 + GFF3041 0.12 -0.5 121,792 - GFF3041 0.12 -0.2 121,792 - GFF3041 0.12 +0.7 121,792 - GFF3041 0.12 -0.5 121,809 + GFF3041 0.14 +0.5 121,809 + GFF3041 0.14 -0.4 121,809 + GFF3041 0.14 +0.9 121,809 + GFF3041 0.14 -0.1 121,809 + GFF3041 0.14 +0.9 121,809 + GFF3041 0.14 +0.9 121,809 + GFF3041 0.14 +0.8 121,809 + GFF3041 0.14 -0.1 121,809 + GFF3041 0.14 -0.3 121,809 + GFF3041 0.14 +0.0 121,809 + GFF3041 0.14 +1.5 121,809 + GFF3041 0.14 +0.0 121,809 + GFF3041 0.14 +0.0 121,809 + GFF3041 0.14 +0.5 121,809 + GFF3041 0.14 -0.3 121,809 + GFF3041 0.14 -0.4 121,809 + GFF3041 0.14 -0.3 121,809 + GFF3041 0.14 +0.5 121,809 + GFF3041 0.14 +0.2 121,810 - GFF3041 0.14 -0.9 121,810 - GFF3041 0.14 -0.1 121,810 - GFF3041 0.14 +1.1 121,810 - GFF3041 0.14 -1.9 121,810 - GFF3041 0.14 -0.9 121,810 - GFF3041 0.14 +1.6 121,810 - GFF3041 0.14 -0.4 121,810 - GFF3041 0.14 -0.3 121,835 + GFF3041 0.16 +1.5 121,836 - GFF3041 0.16 -0.7 121,836 - GFF3041 0.16 +0.3 121,844 + GFF3041 0.17 +0.4 121,976 - GFF3041 0.29 +0.7 122,070 + GFF3041 0.38 +0.1 122,070 + GFF3041 0.38 +0.2 122,070 + GFF3041 0.38 +0.6 122,071 - GFF3041 0.38 +0.3 122,214 + GFF3041 0.51 +0.0 122,214 + GFF3041 0.51 -0.5 122,214 + GFF3041 0.51 -0.1 122,214 + GFF3041 0.51 +0.1 122,214 + GFF3041 0.51 +0.2 122,214 + GFF3041 0.51 -0.3 122,256 + GFF3041 0.54 -1.1 122,256 + GFF3041 0.54 +0.1 122,256 + GFF3041 0.54 +0.2 122,256 + GFF3041 0.54 -0.1 122,256 + GFF3041 0.54 -0.5 122,256 + GFF3041 0.54 +0.5 122,256 + GFF3041 0.54 -0.0 122,257 - GFF3041 0.54 -0.1 122,257 - GFF3041 0.54 +0.2 122,257 - GFF3041 0.54 -1.4 122,257 - GFF3041 0.54 +0.1
Or see this region's nucleotide sequence