Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF301

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF300 and GFF301 are separated by 16 nucleotidesGFF301 and GFF302 are separated by 1 nucleotides GFF300 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 312,880 to 314,385 GFF300 GFF301 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 314,402 to 315,607 GFF301 GFF302 - Glutamyl-tRNA synthetase (EC 6.1.1.17), at 315,609 to 316,997 GFF302 Position (kb) 314 315 316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 314.573 kb on + strand, within GFF301at 315.032 kb on + strand, within GFF301at 315.266 kb on + strand, within GFF301

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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314,573 + GFF301 0.14 -1.4
315,032 + GFF301 0.52 -4.6
315,266 + GFF301 0.72 -2.8

Or see this region's nucleotide sequence