Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2969 and GFF2970 overlap by 4 nucleotides GFF2970 and GFF2971 are separated by 72 nucleotides GFF2971 and GFF2972 overlap by 4 nucleotides
GFF2969 - Methylmalonyl-CoA mutase (EC 5.4.99.2), at 47,043 to 48,668
GFF2969
GFF2970 - Enoyl-CoA hydratase/isomerase, at 48,665 to 49,477
GFF2970
GFF2971 - Transcriptional regulator, IclR family, at 49,550 to 50,365
GFF2971
GFF2972 - TRAP-type C4-dicarboxylate transport system, large permease component, at 50,362 to 51,633
GFF2972
Position (kb) 49
50
51 Strain fitness (log2 ratio) -2
-1
0
1
2 at 49.042 kb on - strand, within GFF2970 at 49.042 kb on - strand, within GFF2970 at 49.128 kb on + strand, within GFF2970 at 49.128 kb on + strand, within GFF2970 at 49.128 kb on + strand, within GFF2970 at 49.129 kb on - strand, within GFF2970 at 49.129 kb on - strand, within GFF2970 at 49.257 kb on + strand, within GFF2970 at 49.257 kb on + strand, within GFF2970 at 49.257 kb on + strand, within GFF2970 at 49.258 kb on - strand, within GFF2970 at 49.258 kb on - strand, within GFF2970 at 49.258 kb on - strand, within GFF2970 at 49.258 kb on - strand, within GFF2970 at 49.288 kb on - strand, within GFF2970 at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.550 kb on - strand at 49.550 kb on - strand at 49.772 kb on + strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.778 kb on + strand, within GFF2971 at 49.778 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.988 kb on + strand, within GFF2971 at 50.177 kb on + strand, within GFF2971 at 50.396 kb on + strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.504 kb on + strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 51.227 kb on + strand, within GFF2972 at 51.227 kb on + strand, within GFF2972 at 51.228 kb on - strand, within GFF2972 at 51.228 kb on - strand, within GFF2972
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 49,042 - GFF2970 0.46 -0.1 49,042 - GFF2970 0.46 -1.4 49,128 + GFF2970 0.57 -0.1 49,128 + GFF2970 0.57 -0.1 49,128 + GFF2970 0.57 +0.0 49,129 - GFF2970 0.57 -0.8 49,129 - GFF2970 0.57 -0.2 49,257 + GFF2970 0.73 -0.2 49,257 + GFF2970 0.73 -0.1 49,257 + GFF2970 0.73 -0.1 49,258 - GFF2970 0.73 -0.7 49,258 - GFF2970 0.73 +0.5 49,258 - GFF2970 0.73 -1.0 49,258 - GFF2970 0.73 -0.1 49,288 - GFF2970 0.77 +1.0 49,480 + -0.2 49,480 + -0.2 49,480 + -0.5 49,480 + +0.5 49,480 + -0.5 49,480 + -2.2 49,480 + +0.6 49,481 - +0.0 49,481 - -0.7 49,481 - -0.7 49,481 - +0.1 49,550 - -0.5 49,550 - +0.2 49,772 + GFF2971 0.27 +0.8 49,773 - GFF2971 0.27 +0.1 49,773 - GFF2971 0.27 -1.1 49,773 - GFF2971 0.27 -0.0 49,778 + GFF2971 0.28 +0.6 49,778 + GFF2971 0.28 -0.0 49,952 + GFF2971 0.49 -0.4 49,952 + GFF2971 0.49 -1.3 49,952 + GFF2971 0.49 +0.1 49,952 + GFF2971 0.49 +0.0 49,952 + GFF2971 0.49 +0.8 49,952 + GFF2971 0.49 -0.0 49,953 - GFF2971 0.49 +1.9 49,953 - GFF2971 0.49 -0.3 49,953 - GFF2971 0.49 +0.2 49,953 - GFF2971 0.49 +0.3 49,953 - GFF2971 0.49 +0.1 49,953 - GFF2971 0.49 -0.3 49,988 + GFF2971 0.54 -0.1 50,177 + GFF2971 0.77 +0.9 50,396 + +0.2 50,397 - +0.1 50,397 - +0.3 50,397 - +0.2 50,397 - +0.1 50,397 - -0.4 50,397 - -0.7 50,397 - +0.8 50,397 - +0.9 50,397 - +0.5 50,504 + GFF2972 0.11 +1.0 50,940 - GFF2972 0.45 +0.9 50,940 - GFF2972 0.45 +0.9 50,940 - GFF2972 0.45 -0.2 51,227 + GFF2972 0.68 +1.6 51,227 + GFF2972 0.68 +0.4 51,228 - GFF2972 0.68 -0.1 51,228 - GFF2972 0.68 -0.0
Or see this region's nucleotide sequence