Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2706 and GFF2707 are separated by 13 nucleotides GFF2707 and GFF2708 are separated by 16 nucleotides GFF2708 and GFF2709 are separated by 29 nucleotides
GFF2706 - Transcriptional regulatory protein, at 297,219 to 298,142
GFF2706
GFF2707 - Putative decarboxylase, at 298,156 to 298,953
GFF2707
GFF2708 - Tricarboxylate transport protein TctC, at 298,970 to 299,938
GFF2708
GFF2709 - hypothetical protein, at 299,968 to 301,005
GFF2709
Position (kb) 298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 298.180 kb on + strand at 298.422 kb on - strand, within GFF2707 at 298.559 kb on + strand, within GFF2707 at 298.559 kb on + strand, within GFF2707 at 298.712 kb on + strand, within GFF2707 at 298.713 kb on - strand, within GFF2707 at 298.713 kb on - strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.925 kb on + strand at 298.935 kb on - strand at 299.130 kb on + strand, within GFF2708 at 299.388 kb on + strand, within GFF2708 at 299.389 kb on - strand, within GFF2708 at 299.389 kb on - strand, within GFF2708 at 299.505 kb on + strand, within GFF2708 at 299.614 kb on - strand, within GFF2708 at 300.105 kb on - strand, within GFF2709 at 300.197 kb on + strand, within GFF2709 at 300.198 kb on - strand, within GFF2709 at 300.198 kb on - strand, within GFF2709 at 300.533 kb on + strand, within GFF2709 at 300.705 kb on - strand, within GFF2709 at 300.741 kb on - strand, within GFF2709 at 300.914 kb on + strand at 300.915 kb on - strand at 300.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 298,180 + +0.4 298,422 - GFF2707 0.33 +0.1 298,559 + GFF2707 0.51 +0.6 298,559 + GFF2707 0.51 +0.8 298,712 + GFF2707 0.70 -2.1 298,713 - GFF2707 0.70 -1.7 298,713 - GFF2707 0.70 +0.1 298,784 + GFF2707 0.79 -0.1 298,784 + GFF2707 0.79 +0.3 298,784 + GFF2707 0.79 +0.1 298,925 + -0.2 298,935 - -0.2 299,130 + GFF2708 0.17 +0.1 299,388 + GFF2708 0.43 +0.2 299,389 - GFF2708 0.43 +0.6 299,389 - GFF2708 0.43 +0.2 299,505 + GFF2708 0.55 +0.9 299,614 - GFF2708 0.66 +0.7 300,105 - GFF2709 0.13 -0.0 300,197 + GFF2709 0.22 -0.1 300,198 - GFF2709 0.22 +0.5 300,198 - GFF2709 0.22 +0.6 300,533 + GFF2709 0.54 +0.9 300,705 - GFF2709 0.71 +0.0 300,741 - GFF2709 0.74 -0.1 300,914 + -0.1 300,915 - -0.6 300,915 - -0.1
Or see this region's nucleotide sequence