Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2641 and GFF2642 are separated by 23 nucleotides GFF2642 and GFF2643 are separated by 150 nucleotides GFF2643 and GFF2644 are separated by 11 nucleotides GFF2644 and GFF2645 are separated by 120 nucleotides
GFF2641 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 236,060 to 237,340
GFF2641
GFF2642 - COGs COG0840, at 237,364 to 237,639
GFF2642
GFF2643 - hypothetical protein, at 237,790 to 238,473
GFF2643
GFF2644 - hypothetical protein, at 238,485 to 238,772
GFF2644
GFF2645 - Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type, at 238,893 to 240,185
GFF2645
Position (kb) 237
238
239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 236.831 kb on + strand, within GFF2641 at 236.831 kb on + strand, within GFF2641 at 237.023 kb on + strand, within GFF2641 at 237.023 kb on + strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.024 kb on - strand, within GFF2641 at 237.305 kb on + strand at 237.305 kb on + strand at 237.305 kb on + strand at 237.726 kb on + strand at 237.726 kb on + strand at 237.726 kb on + strand at 237.853 kb on + strand at 237.853 kb on + strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.854 kb on - strand at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.925 kb on + strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 237.926 kb on - strand, within GFF2643 at 238.048 kb on + strand, within GFF2643 at 238.049 kb on - strand, within GFF2643 at 238.196 kb on - strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.291 kb on + strand, within GFF2643 at 238.292 kb on - strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.312 kb on + strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.313 kb on - strand, within GFF2643 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.630 kb on + strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.631 kb on - strand, within GFF2644 at 238.852 kb on + strand at 238.852 kb on + strand at 238.852 kb on + strand at 238.852 kb on + strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.893 kb on - strand at 238.893 kb on - strand at 239.019 kb on + strand at 239.019 kb on + strand at 239.020 kb on - strand at 239.020 kb on - strand at 239.251 kb on - strand, within GFF2645 at 239.251 kb on - strand, within GFF2645 at 239.466 kb on + strand, within GFF2645 at 239.467 kb on - strand, within GFF2645
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 236,831 + GFF2641 0.60 -0.7 236,831 + GFF2641 0.60 -2.0 237,023 + GFF2641 0.75 -1.9 237,023 + GFF2641 0.75 -1.9 237,024 - GFF2641 0.75 -1.9 237,024 - GFF2641 0.75 -4.0 237,024 - GFF2641 0.75 -4.0 237,305 + -3.4 237,305 + -0.7 237,305 + -1.9 237,726 + +0.0 237,726 + +1.3 237,726 + +0.2 237,853 + +0.6 237,853 + +1.2 237,854 - +1.4 237,854 - +0.7 237,854 - -0.0 237,854 - +0.7 237,925 + GFF2643 0.20 +0.0 237,925 + GFF2643 0.20 +0.6 237,925 + GFF2643 0.20 +0.5 237,925 + GFF2643 0.20 +1.2 237,925 + GFF2643 0.20 +0.5 237,926 - GFF2643 0.20 +0.6 237,926 - GFF2643 0.20 +0.2 238,048 + GFF2643 0.38 +0.6 238,049 - GFF2643 0.38 +0.1 238,196 - GFF2643 0.59 +0.1 238,291 + GFF2643 0.73 +0.4 238,291 + GFF2643 0.73 -0.1 238,291 + GFF2643 0.73 +0.2 238,291 + GFF2643 0.73 -0.1 238,292 - GFF2643 0.73 +0.3 238,312 + GFF2643 0.76 +0.2 238,312 + GFF2643 0.76 -0.7 238,313 - GFF2643 0.76 +0.9 238,313 - GFF2643 0.76 -0.1 238,313 - GFF2643 0.76 +0.4 238,630 + GFF2644 0.50 -0.3 238,630 + GFF2644 0.50 +0.4 238,630 + GFF2644 0.50 +0.3 238,630 + GFF2644 0.50 +0.1 238,630 + GFF2644 0.50 +1.5 238,631 - GFF2644 0.51 -0.3 238,631 - GFF2644 0.51 +0.6 238,631 - GFF2644 0.51 -0.3 238,852 + -0.1 238,852 + +0.1 238,852 + -0.0 238,852 + +0.6 238,853 - +1.9 238,853 - -0.8 238,853 - -0.7 238,853 - -0.3 238,853 - -1.4 238,853 - +0.4 238,853 - -2.0 238,893 - -0.6 238,893 - -0.0 239,019 + +0.4 239,019 + +0.1 239,020 - +0.6 239,020 - +0.7 239,251 - GFF2645 0.28 +0.0 239,251 - GFF2645 0.28 -0.4 239,466 + GFF2645 0.44 -0.9 239,467 - GFF2645 0.44 +0.3
Or see this region's nucleotide sequence