Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2574

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2572 and GFF2573 are separated by 221 nucleotidesGFF2573 and GFF2574 overlap by 1 nucleotidesGFF2574 and GFF2575 overlap by 1 nucleotidesGFF2575 and GFF2576 overlap by 8 nucleotides GFF2572 - Uncharacterized protein with LysM domain, COG1652, at 164,099 to 165,340 GFF2572 GFF2573 - Peptide deformylase (EC 3.5.1.88), at 165,562 to 166,083 GFF2573 GFF2574 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 166,083 to 167,063 GFF2574 GFF2575 - Branched-chain amino acid transport protein AzlC, at 167,063 to 167,806 GFF2575 GFF2576 - Probable transmembrane protein, at 167,799 to 168,134 GFF2576 Position (kb) 166 167 168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 165.129 kb on + strand, within GFF2572at 165.129 kb on + strand, within GFF2572at 165.129 kb on + strand, within GFF2572at 165.129 kb on + strand, within GFF2572at 165.129 kb on + strand, within GFF2572at 165.130 kb on - strand, within GFF2572at 165.130 kb on - strand, within GFF2572at 165.408 kb on + strandat 165.462 kb on + strandat 165.514 kb on + strandat 165.515 kb on - strandat 165.688 kb on + strand, within GFF2573at 165.688 kb on + strand, within GFF2573at 165.688 kb on + strand, within GFF2573at 165.688 kb on + strand, within GFF2573at 165.688 kb on + strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.689 kb on - strand, within GFF2573at 165.865 kb on + strand, within GFF2573at 165.865 kb on + strand, within GFF2573at 165.866 kb on - strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.009 kb on + strand, within GFF2573at 166.010 kb on - strand, within GFF2573at 166.010 kb on - strand, within GFF2573at 166.010 kb on - strand, within GFF2573at 166.293 kb on + strand, within GFF2574at 166.294 kb on - strand, within GFF2574at 166.365 kb on + strand, within GFF2574at 166.365 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.704 kb on + strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 166.705 kb on - strand, within GFF2574at 167.099 kb on + strandat 167.100 kb on - strandat 167.100 kb on - strandat 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.546 kb on - strand, within GFF2575at 167.932 kb on - strand, within GFF2576

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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165,129 + GFF2572 0.83 +0.0
165,129 + GFF2572 0.83 +0.3
165,129 + GFF2572 0.83 +0.5
165,129 + GFF2572 0.83 -0.1
165,129 + GFF2572 0.83 +0.3
165,130 - GFF2572 0.83 +0.3
165,130 - GFF2572 0.83 +0.2
165,408 + +0.1
165,462 + +1.3
165,514 + +1.0
165,515 - -0.2
165,688 + GFF2573 0.24 -0.7
165,688 + GFF2573 0.24 -1.9
165,688 + GFF2573 0.24 -1.1
165,688 + GFF2573 0.24 -2.9
165,688 + GFF2573 0.24 +0.3
165,689 - GFF2573 0.24 -1.4
165,689 - GFF2573 0.24 -1.4
165,689 - GFF2573 0.24 -0.1
165,689 - GFF2573 0.24 -4.1
165,689 - GFF2573 0.24 -2.9
165,689 - GFF2573 0.24 -2.4
165,689 - GFF2573 0.24 -2.6
165,689 - GFF2573 0.24 -2.8
165,689 - GFF2573 0.24 -2.6
165,689 - GFF2573 0.24 -2.6
165,689 - GFF2573 0.24 -1.9
165,689 - GFF2573 0.24 -2.4
165,689 - GFF2573 0.24 -2.8
165,689 - GFF2573 0.24 -2.4
165,865 + GFF2573 0.58 -2.1
165,865 + GFF2573 0.58 -2.3
165,866 - GFF2573 0.58 -1.1
166,009 + GFF2573 0.86 -2.9
166,009 + GFF2573 0.86 -1.4
166,009 + GFF2573 0.86 -2.3
166,009 + GFF2573 0.86 -1.4
166,009 + GFF2573 0.86 -2.1
166,009 + GFF2573 0.86 -2.3
166,009 + GFF2573 0.86 -2.8
166,010 - GFF2573 0.86 -1.7
166,010 - GFF2573 0.86 -1.1
166,010 - GFF2573 0.86 -2.3
166,293 + GFF2574 0.21 -1.4
166,294 - GFF2574 0.22 -1.8
166,365 + GFF2574 0.29 -1.7
166,365 + GFF2574 0.29 -1.9
166,704 + GFF2574 0.63 -2.7
166,704 + GFF2574 0.63 -2.3
166,704 + GFF2574 0.63 -2.1
166,704 + GFF2574 0.63 -2.8
166,704 + GFF2574 0.63 -2.1
166,704 + GFF2574 0.63 -3.9
166,704 + GFF2574 0.63 -2.3
166,705 - GFF2574 0.63 -2.4
166,705 - GFF2574 0.63 -2.1
166,705 - GFF2574 0.63 -1.4
166,705 - GFF2574 0.63 -1.9
166,705 - GFF2574 0.63 -1.9
166,705 - GFF2574 0.63 -3.0
167,099 + -0.4
167,100 - -0.4
167,100 - -0.1
167,355 - GFF2575 0.39 -0.5
167,355 - GFF2575 0.39 +0.0
167,355 - GFF2575 0.39 +0.1
167,355 - GFF2575 0.39 -0.4
167,355 - GFF2575 0.39 -0.3
167,396 + GFF2575 0.45 +0.6
167,396 + GFF2575 0.45 +0.1
167,396 + GFF2575 0.45 -1.2
167,397 - GFF2575 0.45 +0.2
167,397 - GFF2575 0.45 -0.3
167,417 + GFF2575 0.48 -1.4
167,417 + GFF2575 0.48 -1.1
167,417 + GFF2575 0.48 -0.8
167,417 + GFF2575 0.48 -0.7
167,417 + GFF2575 0.48 -0.0
167,417 + GFF2575 0.48 -0.5
167,417 + GFF2575 0.48 -1.6
167,418 - GFF2575 0.48 -0.4
167,418 - GFF2575 0.48 -0.2
167,418 - GFF2575 0.48 -0.3
167,486 + GFF2575 0.57 +0.8
167,486 + GFF2575 0.57 +0.3
167,487 - GFF2575 0.57 -1.8
167,487 - GFF2575 0.57 +0.5
167,487 - GFF2575 0.57 -0.4
167,513 + GFF2575 0.60 -0.2
167,513 + GFF2575 0.60 -0.2
167,513 + GFF2575 0.60 -0.4
167,513 + GFF2575 0.60 -0.2
167,514 - GFF2575 0.61 +0.1
167,514 - GFF2575 0.61 +0.0
167,514 - GFF2575 0.61 -0.4
167,514 - GFF2575 0.61 +0.0
167,514 - GFF2575 0.61 -0.7
167,514 - GFF2575 0.61 -0.3
167,514 - GFF2575 0.61 +0.6
167,546 - GFF2575 0.65 -2.1
167,932 - GFF2576 0.40 -0.2

Or see this region's nucleotide sequence