Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2521 and GFF2522 are separated by 7 nucleotides GFF2522 and GFF2523 overlap by 4 nucleotides GFF2523 and GFF2524 are separated by 9 nucleotides
GFF2521 - FIG002994: Putative transcriptional regulator, at 104,158 to 104,598
GFF2521
GFF2522 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 104,606 to 105,457
GFF2522
GFF2523 - FIG002577: Putative lipoprotein precursor, at 105,454 to 105,993
GFF2523
GFF2524 - FIG097052: Sugar transporter, at 106,003 to 107,319
GFF2524
Position (kb) 105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 104.507 kb on + strand, within GFF2521 at 104.507 kb on + strand, within GFF2521 at 104.508 kb on - strand, within GFF2521 at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.600 kb on + strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.601 kb on - strand at 104.603 kb on - strand at 104.607 kb on + strand at 104.609 kb on + strand at 104.609 kb on + strand at 104.610 kb on - strand at 104.610 kb on - strand at 104.610 kb on - strand at 104.640 kb on + strand at 104.650 kb on - strand at 104.865 kb on + strand, within GFF2522 at 104.865 kb on + strand, within GFF2522 at 104.865 kb on + strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.866 kb on - strand, within GFF2522 at 104.910 kb on + strand, within GFF2522 at 104.910 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.030 kb on + strand, within GFF2522 at 105.031 kb on - strand, within GFF2522 at 105.094 kb on - strand, within GFF2522 at 105.094 kb on - strand, within GFF2522 at 105.108 kb on + strand, within GFF2522 at 105.109 kb on - strand, within GFF2522 at 105.582 kb on - strand, within GFF2523 at 105.582 kb on - strand, within GFF2523 at 105.582 kb on - strand, within GFF2523 at 105.582 kb on - strand, within GFF2523 at 105.582 kb on - strand, within GFF2523 at 105.615 kb on - strand, within GFF2523 at 105.851 kb on + strand, within GFF2523 at 105.851 kb on + strand, within GFF2523 at 105.875 kb on + strand, within GFF2523 at 105.875 kb on + strand, within GFF2523 at 105.875 kb on + strand, within GFF2523 at 105.875 kb on + strand, within GFF2523 at 105.875 kb on + strand, within GFF2523 at 105.911 kb on + strand, within GFF2523 at 105.911 kb on + strand, within GFF2523 at 106.067 kb on + strand at 106.067 kb on + strand at 106.068 kb on - strand at 106.115 kb on + strand at 106.251 kb on - strand, within GFF2524 at 106.251 kb on - strand, within GFF2524 at 106.251 kb on - strand, within GFF2524 at 106.514 kb on + strand, within GFF2524 at 106.514 kb on + strand, within GFF2524 at 106.515 kb on - strand, within GFF2524 at 106.515 kb on - strand, within GFF2524 at 106.515 kb on - strand, within GFF2524 at 106.515 kb on - strand, within GFF2524 at 106.920 kb on - strand, within GFF2524 at 106.920 kb on - strand, within GFF2524 at 106.927 kb on - strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.928 kb on + strand, within GFF2524 at 106.929 kb on - strand, within GFF2524
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 104,507 + GFF2521 0.79 +0.5 104,507 + GFF2521 0.79 -0.0 104,508 - GFF2521 0.79 +0.1 104,600 + +0.9 104,600 + +0.3 104,600 + -0.9 104,600 + -0.3 104,600 + +0.1 104,600 + -0.9 104,601 - -0.8 104,601 - +0.3 104,601 - +0.3 104,601 - -1.9 104,601 - -0.9 104,603 - -0.1 104,607 + -1.3 104,609 + -0.4 104,609 + +0.9 104,610 - +0.5 104,610 - -0.4 104,610 - -0.9 104,640 + +1.2 104,650 - +0.9 104,865 + GFF2522 0.30 -0.7 104,865 + GFF2522 0.30 -1.3 104,865 + GFF2522 0.30 +0.3 104,866 - GFF2522 0.31 +0.2 104,866 - GFF2522 0.31 +0.4 104,866 - GFF2522 0.31 +0.6 104,866 - GFF2522 0.31 +2.0 104,910 + GFF2522 0.36 -0.5 104,910 + GFF2522 0.36 +0.9 105,030 + GFF2522 0.50 +0.1 105,030 + GFF2522 0.50 +0.5 105,030 + GFF2522 0.50 +0.3 105,031 - GFF2522 0.50 +0.4 105,094 - GFF2522 0.57 -0.8 105,094 - GFF2522 0.57 -0.5 105,108 + GFF2522 0.59 +0.1 105,109 - GFF2522 0.59 +0.0 105,582 - GFF2523 0.24 -0.3 105,582 - GFF2523 0.24 +0.2 105,582 - GFF2523 0.24 -0.6 105,582 - GFF2523 0.24 -0.5 105,582 - GFF2523 0.24 -0.3 105,615 - GFF2523 0.30 +0.3 105,851 + GFF2523 0.74 -0.4 105,851 + GFF2523 0.74 -0.2 105,875 + GFF2523 0.78 +0.3 105,875 + GFF2523 0.78 +0.9 105,875 + GFF2523 0.78 -0.1 105,875 + GFF2523 0.78 -0.1 105,875 + GFF2523 0.78 -0.6 105,911 + GFF2523 0.85 +0.0 105,911 + GFF2523 0.85 -0.4 106,067 + -1.8 106,067 + -0.4 106,068 - +0.7 106,115 + -0.1 106,251 - GFF2524 0.19 -1.4 106,251 - GFF2524 0.19 +0.2 106,251 - GFF2524 0.19 -0.6 106,514 + GFF2524 0.39 +1.2 106,514 + GFF2524 0.39 +0.5 106,515 - GFF2524 0.39 +0.6 106,515 - GFF2524 0.39 +0.1 106,515 - GFF2524 0.39 +0.2 106,515 - GFF2524 0.39 +0.6 106,920 - GFF2524 0.70 +1.2 106,920 - GFF2524 0.70 +0.6 106,927 - GFF2524 0.70 -0.5 106,928 + GFF2524 0.70 -2.1 106,928 + GFF2524 0.70 -0.6 106,928 + GFF2524 0.70 -0.3 106,928 + GFF2524 0.70 +0.3 106,928 + GFF2524 0.70 +0.6 106,928 + GFF2524 0.70 +0.5 106,928 + GFF2524 0.70 +0.4 106,928 + GFF2524 0.70 +0.9 106,928 + GFF2524 0.70 +0.9 106,928 + GFF2524 0.70 +1.3 106,929 - GFF2524 0.70 -0.0
Or see this region's nucleotide sequence