Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2510 and GFF2511 are separated by 63 nucleotides GFF2511 and GFF2512 are separated by 57 nucleotides GFF2512 and GFF2513 are separated by 13 nucleotides GFF2513 and GFF2514 are separated by 82 nucleotides
GFF2510 - Type IV pilin PilA, at 96,308 to 96,850
GFF2510
GFF2511 - Molybdenum cofactor biosynthesis protein MoaC, at 96,914 to 97,408
GFF2511
GFF2512 - Exported zinc metalloprotease YfgC precursor, at 97,466 to 99,157
GFF2512
GFF2513 - putative membrane protein, at 99,171 to 99,533
GFF2513
GFF2514 - Membrane protein TerC, possibly involved in tellurium resistance, at 99,616 to 100,368
GFF2514
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 96.658 kb on + strand, within GFF2510 at 96.658 kb on + strand, within GFF2510 at 96.659 kb on - strand, within GFF2510 at 96.725 kb on + strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.827 kb on + strand at 96.827 kb on + strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.849 kb on - strand at 96.860 kb on + strand at 96.860 kb on + strand at 96.861 kb on - strand at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.012 kb on - strand, within GFF2511 at 97.012 kb on - strand, within GFF2511 at 97.399 kb on + strand at 97.400 kb on - strand at 97.430 kb on + strand at 97.430 kb on + strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.431 kb on - strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.459 kb on + strand at 97.460 kb on - strand at 97.460 kb on - strand at 97.685 kb on + strand, within GFF2512 at 97.685 kb on + strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.686 kb on - strand, within GFF2512 at 97.700 kb on + strand, within GFF2512 at 97.727 kb on + strand, within GFF2512 at 98.114 kb on - strand, within GFF2512 at 98.256 kb on - strand, within GFF2512 at 98.256 kb on - strand, within GFF2512 at 98.940 kb on + strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 99.156 kb on - strand at 99.156 kb on - strand at 99.156 kb on - strand at 99.226 kb on + strand, within GFF2513 at 99.226 kb on + strand, within GFF2513 at 99.226 kb on + strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.460 kb on + strand, within GFF2513 at 99.461 kb on - strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.534 kb on - strand at 99.534 kb on - strand at 99.534 kb on - strand at 99.707 kb on + strand, within GFF2514 at 99.707 kb on + strand, within GFF2514 at 99.707 kb on + strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 100.071 kb on + strand, within GFF2514
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 96,658 + GFF2510 0.64 -1.1 96,658 + GFF2510 0.64 +0.2 96,659 - GFF2510 0.65 -0.1 96,725 + GFF2510 0.77 +0.3 96,726 - GFF2510 0.77 -0.4 96,726 - GFF2510 0.77 -0.1 96,726 - GFF2510 0.77 +1.5 96,726 - GFF2510 0.77 +0.6 96,726 - GFF2510 0.77 -0.5 96,827 + +0.9 96,827 + -0.2 96,828 - +0.2 96,828 - +0.3 96,828 - +0.6 96,828 - +0.2 96,828 - -0.6 96,828 - +0.8 96,828 - +0.1 96,828 - +0.1 96,828 - +0.9 96,828 - +1.3 96,848 + -0.5 96,848 + -0.1 96,848 + +0.9 96,849 - -0.1 96,860 + +0.2 96,860 + +1.2 96,861 - -0.6 97,011 + GFF2511 0.20 -0.7 97,011 + GFF2511 0.20 -0.2 97,011 + GFF2511 0.20 -1.1 97,012 - GFF2511 0.20 -0.4 97,012 - GFF2511 0.20 -0.4 97,399 + -0.4 97,400 - +0.9 97,430 + +0.6 97,430 + +0.9 97,431 - +0.2 97,431 - -1.8 97,431 - +0.2 97,431 - -2.4 97,459 + +0.3 97,459 + -0.5 97,459 + +0.5 97,459 + +2.9 97,460 - -0.7 97,460 - +1.2 97,685 + GFF2512 0.13 -1.9 97,685 + GFF2512 0.13 -0.9 97,686 - GFF2512 0.13 -1.4 97,686 - GFF2512 0.13 -1.7 97,686 - GFF2512 0.13 -2.2 97,686 - GFF2512 0.13 -1.2 97,700 + GFF2512 0.14 -0.9 97,727 + GFF2512 0.15 -0.4 98,114 - GFF2512 0.38 -1.4 98,256 - GFF2512 0.47 -1.3 98,256 - GFF2512 0.47 -1.2 98,940 + GFF2512 0.87 -0.7 98,940 - GFF2512 0.87 +0.5 98,940 - GFF2512 0.87 -0.7 98,940 - GFF2512 0.87 -2.0 98,940 - GFF2512 0.87 +0.6 98,940 - GFF2512 0.87 -1.4 99,156 - +0.1 99,156 - -0.6 99,156 - +0.1 99,226 + GFF2513 0.15 +0.2 99,226 + GFF2513 0.15 -0.3 99,226 + GFF2513 0.15 -0.0 99,227 - GFF2513 0.15 +1.1 99,227 - GFF2513 0.15 +0.4 99,227 - GFF2513 0.15 +0.6 99,227 - GFF2513 0.15 +0.3 99,460 + GFF2513 0.80 -0.2 99,461 - GFF2513 0.80 +0.6 99,466 + GFF2513 0.81 -1.2 99,466 + GFF2513 0.81 +0.9 99,466 + GFF2513 0.81 -0.3 99,466 + GFF2513 0.81 -0.3 99,467 - GFF2513 0.82 -0.4 99,467 - GFF2513 0.82 -0.1 99,467 - GFF2513 0.82 -0.2 99,467 - GFF2513 0.82 +1.1 99,467 - GFF2513 0.82 +0.9 99,467 - GFF2513 0.82 +0.4 99,467 - GFF2513 0.82 +0.1 99,467 - GFF2513 0.82 -0.4 99,533 + -0.2 99,533 + -0.3 99,533 + +0.2 99,533 + +0.5 99,533 + -0.4 99,533 + -0.1 99,533 + -0.3 99,534 - -0.2 99,534 - +0.7 99,534 - -0.9 99,707 + GFF2514 0.12 +0.3 99,707 + GFF2514 0.12 -0.3 99,707 + GFF2514 0.12 -0.4 99,708 - GFF2514 0.12 +0.6 99,708 - GFF2514 0.12 -0.3 99,708 - GFF2514 0.12 +0.0 99,708 - GFF2514 0.12 +2.3 99,708 - GFF2514 0.12 +0.1 100,071 + GFF2514 0.60 -0.2
Or see this region's nucleotide sequence