Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2507

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
93,136	+				+0.1
93,136	+				+0.7
93,136	+				+0.4
93,136	+				-0.2
93,137	-				+0.0
93,137	-				+0.4
93,137	-				+0.1
93,137	-				+0.5
93,137	-				+0.4
93,421	+				+0.7
93,421	+				+0.8
93,422	-				+0.7
93,422	-				+0.4
93,422	-				+0.2
93,423	+				+1.1
93,423	+				+0.1
93,423	+				-0.3
93,423	+				+0.1
93,423	+				+1.2
93,423	+				+0.0
93,423	+				+0.4
93,423	+				-0.0
93,423	+				+0.0
93,423	+				-1.4
93,424	-				-0.1
93,424	-				+0.1
93,424	-				-0.3
93,424	-				-0.8
93,424	-				-0.0
93,424	-				-0.2
93,424	-				+1.1
93,424	-				+0.7
93,424	-				+1.3
93,424	-				+0.5
93,636	+				+1.4
93,636	+				+1.4
93,636	+				+0.9
93,636	+				+0.7
93,636	+				+0.2
93,636	+				+1.3
93,636	+				+0.1
93,636	+				+0.9
93,636	+				+1.0
93,636	+				-0.4
93,636	+				-1.0
93,636	+				+0.4
93,636	+				+1.2
93,636	+				+0.3
93,636	+				+0.5
93,637	-				+0.2
93,637	-				+1.1
93,637	-				+0.8
93,637	-				+0.1
93,637	-				+0.4
93,637	-				+1.5
93,637	-				+0.2
93,637	-				-0.3
93,637	-				-0.2
93,637	-				-0.1
93,637	-				+0.6
93,637	-				-0.2
93,637	-				+0.3
93,637	-				-0.1
93,637	-				+0.7
93,637	-				+1.1
93,637	-				+0.3
93,637	-				+0.6
93,637	-				-0.0
93,637	-				-0.3
93,637	-				+0.9
93,637	-				-0.4
93,638	+				+0.6
93,638	+				+0.2
93,638	+				+2.8
93,639	-				+0.2
93,639	-				-0.0
93,639	-				-0.0
93,639	-				+1.2
93,650	+				+0.8
93,650	+				+1.0
93,650	+				+0.4
93,651	-				+0.8
93,651	-				+0.5
93,651	-				+1.6
93,768	+		GFF2507	0.15	-0.1
93,768	+		GFF2507	0.15	-0.3
93,768	+		GFF2507	0.15	-1.9
93,945	+		GFF2507	0.37	+0.3
93,945	+		GFF2507	0.37	-2.4
94,012	+		GFF2507	0.46	-2.3
94,013	-		GFF2507	0.46	-1.7
94,013	-		GFF2507	0.46	-2.5
94,200	+		GFF2507	0.70	-2.0
94,224	+		GFF2507	0.73	-2.7
94,224	+		GFF2507	0.73	-2.1
94,224	+		GFF2507	0.73	-1.3
94,225	-		GFF2507	0.73	-1.1
94,361	+				-1.3
94,372	+				+0.3
94,372	+				-1.0
94,380	+				-2.6
94,380	+				-1.9
94,381	-				-1.7
94,434	+				+0.7
94,434	+				-0.4
94,434	+				-0.4
94,435	-				-0.9
94,435	-				-1.2
94,435	-				+0.1
94,471	+				-1.4
94,471	+				-0.7
94,471	+				+0.4
94,471	+				-1.3
94,471	+				+0.3
94,471	+				-0.3
94,471	+				-1.7
94,471	+				-0.2
94,471	+				-0.7
94,471	+				-0.6
94,471	+				-1.0
94,472	-				-0.6
94,472	-				-1.0
94,472	-				+0.3
94,472	-				-0.4
94,472	-				-1.9
94,472	-				-1.1
94,472	-				-1.0
94,472	-				-0.3
94,472	-				-0.9
94,472	-				+0.1
94,472	-				-0.8
94,472	-				-0.6
94,475	+				-0.2
94,475	+				-1.3
94,475	+				+0.5
94,475	+				-1.7
94,475	+				-0.4
94,476	-				-1.3
94,476	-				-2.1
94,476	-				-0.5
94,476	-				+0.0
94,476	-				-0.1
94,538	+				-1.0
94,538	+				-0.4
94,538	+				-0.5
94,538	+				-0.1
94,538	+				-1.1
94,539	-				-0.8
94,539	-				-1.6
94,539	-				-1.4
94,579	+		GFF2508	0.14	-2.1
94,579	+		GFF2508	0.14	-0.8
94,579	+		GFF2508	0.14	+0.3
94,579	+		GFF2508	0.14	+2.5
94,579	+		GFF2508	0.14	-4.8
94,579	+		GFF2508	0.14	-1.4
94,579	+		GFF2508	0.14	-1.8
94,579	+		GFF2508	0.14	-2.0
94,579	+		GFF2508	0.14	-1.1
94,579	+		GFF2508	0.14	-0.1
94,579	+		GFF2508	0.14	-1.5
94,579	+		GFF2508	0.14	-1.5
94,580	-		GFF2508	0.14	-1.3
94,580	-		GFF2508	0.14	-1.9
94,580	-		GFF2508	0.14	-1.7
94,580	-		GFF2508	0.14	-1.1
94,580	-		GFF2508	0.14	-1.2
94,580	-		GFF2508	0.14	-2.3
94,580	-		GFF2508	0.14	-1.8
94,580	-		GFF2508	0.14	-1.6
94,580	-		GFF2508	0.14	-1.1
94,580	-		GFF2508	0.14	-1.8
94,580	-		GFF2508	0.14	-1.1
94,580	-		GFF2508	0.14	-1.4
94,580	-		GFF2508	0.14	-0.1
94,687	+		GFF2508	0.31	-1.0
94,687	+		GFF2508	0.31	-1.9
94,687	+		GFF2508	0.31	-1.2
94,687	+		GFF2508	0.31	+0.9
94,687	+		GFF2508	0.31	+0.0
94,687	+		GFF2508	0.31	-1.1
94,687	+		GFF2508	0.31	-1.4
94,687	+		GFF2508	0.31	-1.0
94,687	+		GFF2508	0.31	-1.5
94,687	+		GFF2508	0.31	-0.4
94,687	+		GFF2508	0.31	-1.8
94,687	+		GFF2508	0.31	+0.2
94,687	+		GFF2508	0.31	-0.9
94,688	-		GFF2508	0.31	-0.1
94,688	-		GFF2508	0.31	-0.1
94,688	-		GFF2508	0.31	-1.1
94,688	-		GFF2508	0.31	-1.3
94,688	-		GFF2508	0.31	-1.7
94,688	-		GFF2508	0.31	-0.1
94,688	-		GFF2508	0.31	-0.4
94,688	-		GFF2508	0.31	-1.0
94,753	+		GFF2508	0.41	-2.1
94,753	+		GFF2508	0.41	-0.3
94,753	+		GFF2508	0.41	-0.9
94,753	+		GFF2508	0.41	-2.1
94,753	+		GFF2508	0.41	-0.9
94,753	+		GFF2508	0.41	-2.9
94,754	-		GFF2508	0.42	-1.1
94,754	-		GFF2508	0.42	-1.0
94,754	-		GFF2508	0.42	-1.4
94,754	-		GFF2508	0.42	-0.4
94,754	-		GFF2508	0.42	-0.5
94,792	+		GFF2508	0.48	-0.2
94,792	+		GFF2508	0.48	-1.1
94,792	+		GFF2508	0.48	-0.6
94,792	+		GFF2508	0.48	+0.1
94,793	-		GFF2508	0.48	-0.4
94,793	-		GFF2508	0.48	-0.5
94,793	-		GFF2508	0.48	+0.6
94,987	+		GFF2508	0.79	-0.8
94,987	+		GFF2508	0.79	-0.1
94,987	+		GFF2508	0.79	-0.7
94,987	+		GFF2508	0.79	-1.2
94,987	+		GFF2508	0.79	-0.4
94,987	+		GFF2508	0.79	-1.3
94,987	+		GFF2508	0.79	-1.0
94,987	+		GFF2508	0.79	-0.5
94,988	-		GFF2508	0.79	-0.7
94,988	-		GFF2508	0.79	+0.9
94,988	-		GFF2508	0.79	-1.1
95,328	+				-0.2