Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2485

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2484 and GFF2485 are separated by 132 nucleotidesGFF2485 and GFF2486 are separated by 31 nucleotidesGFF2486 and GFF2487 are separated by 183 nucleotides GFF2484 - Iron-regulated protein A precursor, at 67,325 to 68,509 GFF2484 GFF2485 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 68,642 to 70,048 GFF2485 GFF2486 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 70,080 to 70,775 GFF2486 GFF2487 - Transketolase (EC 2.2.1.1), at 70,959 to 73,052 GFF2487 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -2 -1 0 1at 67.816 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.935 kb on + strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.202 kb on + strand, within GFF2484at 68.202 kb on + strand, within GFF2484at 68.203 kb on - strand, within GFF2484at 68.203 kb on - strand, within GFF2484at 68.349 kb on + strand, within GFF2484at 68.349 kb on + strand, within GFF2484at 68.349 kb on + strand, within GFF2484at 68.350 kb on - strand, within GFF2484at 68.350 kb on - strand, within GFF2484at 68.350 kb on - strand, within GFF2484at 68.350 kb on - strand, within GFF2484at 68.373 kb on + strand, within GFF2484at 68.374 kb on - strand, within GFF2484at 68.395 kb on - strandat 68.974 kb on - strand, within GFF2485at 68.986 kb on - strand, within GFF2485at 69.403 kb on - strand, within GFF2485at 69.882 kb on + strand, within GFF2485at 69.891 kb on + strand, within GFF2485at 69.891 kb on + strand, within GFF2485at 69.892 kb on - strand, within GFF2485at 69.892 kb on - strand, within GFF2485at 70.011 kb on + strandat 70.135 kb on + strandat 70.280 kb on - strand, within GFF2486at 70.445 kb on - strand, within GFF2486at 70.829 kb on + strandat 70.862 kb on + strandat 70.862 kb on + strandat 70.863 kb on - strandat 70.863 kb on - strandat 70.895 kb on + strandat 70.896 kb on - strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.940 kb on + strandat 70.941 kb on - strandat 70.941 kb on - strandat 70.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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67,816 - GFF2484 0.41 +0.0
67,816 - GFF2484 0.41 +0.1
67,816 - GFF2484 0.41 -0.1
67,935 + GFF2484 0.51 -0.4
67,936 - GFF2484 0.52 +0.9
67,936 - GFF2484 0.52 -0.6
67,936 - GFF2484 0.52 +0.2
67,936 - GFF2484 0.52 -0.0
67,936 - GFF2484 0.52 -0.3
67,936 - GFF2484 0.52 -0.1
68,124 + GFF2484 0.67 -0.2
68,124 + GFF2484 0.67 -0.5
68,124 + GFF2484 0.67 +0.9
68,124 + GFF2484 0.67 +1.1
68,124 + GFF2484 0.67 -0.3
68,124 + GFF2484 0.67 -0.1
68,124 + GFF2484 0.67 -0.5
68,133 + GFF2484 0.68 +0.9
68,133 + GFF2484 0.68 -0.1
68,133 + GFF2484 0.68 +0.1
68,134 - GFF2484 0.68 -0.7
68,134 - GFF2484 0.68 +0.2
68,134 - GFF2484 0.68 -0.3
68,134 - GFF2484 0.68 +0.6
68,134 - GFF2484 0.68 -0.1
68,202 + GFF2484 0.74 -0.2
68,202 + GFF2484 0.74 -0.1
68,203 - GFF2484 0.74 -0.4
68,203 - GFF2484 0.74 +0.6
68,349 + GFF2484 0.86 +0.7
68,349 + GFF2484 0.86 -0.1
68,349 + GFF2484 0.86 -0.4
68,350 - GFF2484 0.86 -1.0
68,350 - GFF2484 0.86 -2.2
68,350 - GFF2484 0.86 +0.1
68,350 - GFF2484 0.86 +0.5
68,373 + GFF2484 0.88 +0.3
68,374 - GFF2484 0.89 +0.0
68,395 - +0.3
68,974 - GFF2485 0.24 -2.1
68,986 - GFF2485 0.24 -2.6
69,403 - GFF2485 0.54 -0.1
69,882 + GFF2485 0.88 -1.9
69,891 + GFF2485 0.89 -1.4
69,891 + GFF2485 0.89 -0.3
69,892 - GFF2485 0.89 -2.4
69,892 - GFF2485 0.89 -2.7
70,011 + -1.0
70,135 + +0.1
70,280 - GFF2486 0.29 -1.9
70,445 - GFF2486 0.52 +0.9
70,829 + +0.2
70,862 + -0.1
70,862 + +1.0
70,863 - -0.1
70,863 - -0.1
70,895 + -1.2
70,896 - -0.2
70,940 + +0.1
70,940 + +0.5
70,940 + -0.1
70,940 + -0.8
70,940 + -0.5
70,940 + -0.4
70,940 + -0.3
70,940 + +0.3
70,941 - +0.1
70,941 - -1.1
70,941 - -0.1

Or see this region's nucleotide sequence