Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2475

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2474 and GFF2475 overlap by 4 nucleotidesGFF2475 and GFF2476 are separated by 32 nucleotidesGFF2476 and GFF2477 are separated by 61 nucleotides GFF2474 - Hemin transport protein HmuS, at 58,045 to 59,115 GFF2474 GFF2475 - hypothetical protein, at 59,112 to 59,513 GFF2475 GFF2476 - Periplasmic hemin-binding protein, at 59,546 to 60,430 GFF2476 GFF2477 - hypothetical protein, at 60,492 to 60,989 GFF2477 Position (kb) 59 60Strain fitness (log2 ratio) -1 0 1at 58.297 kb on + strand, within GFF2474at 58.297 kb on + strand, within GFF2474at 58.480 kb on + strand, within GFF2474at 58.481 kb on - strand, within GFF2474at 58.481 kb on - strand, within GFF2474at 58.723 kb on + strand, within GFF2474at 58.723 kb on + strand, within GFF2474at 58.724 kb on - strand, within GFF2474at 59.190 kb on + strand, within GFF2475at 59.190 kb on + strand, within GFF2475at 59.191 kb on - strand, within GFF2475at 59.238 kb on + strand, within GFF2475at 59.239 kb on - strand, within GFF2475at 59.239 kb on - strand, within GFF2475at 59.281 kb on - strand, within GFF2475at 59.691 kb on - strand, within GFF2476at 59.777 kb on + strand, within GFF2476at 59.777 kb on + strand, within GFF2476at 59.778 kb on - strand, within GFF2476at 59.778 kb on - strand, within GFF2476

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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58,297 + GFF2474 0.24 +0.3
58,297 + GFF2474 0.24 -0.6
58,480 + GFF2474 0.41 +0.1
58,481 - GFF2474 0.41 +0.3
58,481 - GFF2474 0.41 -0.9
58,723 + GFF2474 0.63 -0.3
58,723 + GFF2474 0.63 +0.9
58,724 - GFF2474 0.63 +0.1
59,190 + GFF2475 0.19 -1.4
59,190 + GFF2475 0.19 +0.1
59,191 - GFF2475 0.20 -0.1
59,238 + GFF2475 0.31 -0.0
59,239 - GFF2475 0.32 +0.2
59,239 - GFF2475 0.32 -0.4
59,281 - GFF2475 0.42 -0.1
59,691 - GFF2476 0.16 +0.6
59,777 + GFF2476 0.26 +0.9
59,777 + GFF2476 0.26 -0.2
59,778 - GFF2476 0.26 +0.9
59,778 - GFF2476 0.26 -0.4

Or see this region's nucleotide sequence