Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF243 and GFF244 are separated by 65 nucleotides GFF244 and GFF245 are separated by 0 nucleotides GFF245 and GFF246 are separated by 61 nucleotides GFF246 and GFF247 are separated by 13 nucleotides
GFF243 - Putative exported protein, at 261,155 to 261,748
GFF243
GFF244 - MOSC domain protein, at 261,814 to 262,395
GFF244
GFF245 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 262,396 to 263,316
GFF245
GFF246 - Thiazole biosynthesis protein ThiG, at 263,378 to 264,196
GFF246
GFF247 - Sulfur carrier protein ThiS, at 264,210 to 264,407
GFF247
Position (kb) 262
263
264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 261.513 kb on + strand, within GFF243 at 261.514 kb on - strand, within GFF243 at 261.514 kb on - strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.546 kb on + strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.547 kb on - strand, within GFF243 at 261.573 kb on + strand, within GFF243 at 261.574 kb on - strand, within GFF243 at 261.627 kb on + strand, within GFF243 at 261.627 kb on + strand, within GFF243 at 262.652 kb on + strand, within GFF245 at 262.653 kb on - strand, within GFF245 at 262.653 kb on - strand, within GFF245 at 262.989 kb on - strand, within GFF245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 261,513 + GFF243 0.60 +0.2 261,514 - GFF243 0.60 -0.5 261,514 - GFF243 0.60 +0.3 261,546 + GFF243 0.66 +0.2 261,546 + GFF243 0.66 +0.5 261,546 + GFF243 0.66 +0.1 261,547 - GFF243 0.66 -2.4 261,547 - GFF243 0.66 -0.8 261,547 - GFF243 0.66 +0.1 261,573 + GFF243 0.70 -1.0 261,574 - GFF243 0.71 -0.5 261,627 + GFF243 0.79 -0.2 261,627 + GFF243 0.79 +0.2 262,652 + GFF245 0.28 -1.9 262,653 - GFF245 0.28 -3.0 262,653 - GFF245 0.28 -3.8 262,989 - GFF245 0.64 -1.9
Or see this region's nucleotide sequence