Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2406 and GFF2407 are separated by 86 nucleotides GFF2407 and GFF2408 are separated by 683 nucleotides GFF2408 and GFF2409 are separated by 65 nucleotides
GFF2406 - histone-like protein, at 52,776 to 52,970
GFF2406
GFF2407 - Diacylglycerol kinase (EC 2.7.1.107), at 53,057 to 53,257
GFF2407
GFF2408 - inner membrane protein, at 53,941 to 55,692
GFF2408
GFF2409 - Sensor protein, at 55,758 to 57,071
GFF2409
Position (kb) 53
54
55
56 Strain fitness (log2 ratio) -1
0
1 at 53.661 kb on + strand at 53.662 kb on - strand at 53.726 kb on + strand at 53.726 kb on + strand at 53.729 kb on + strand at 53.729 kb on + strand at 53.729 kb on + strand at 53.730 kb on - strand at 53.733 kb on - strand at 53.831 kb on + strand at 53.832 kb on - strand at 53.912 kb on - strand at 53.912 kb on - strand at 53.915 kb on + strand at 53.934 kb on + strand at 54.040 kb on + strand at 54.041 kb on - strand at 54.041 kb on - strand at 54.041 kb on - strand at 54.221 kb on + strand, within GFF2408 at 54.263 kb on + strand, within GFF2408 at 54.264 kb on - strand, within GFF2408 at 54.264 kb on - strand, within GFF2408 at 54.264 kb on - strand, within GFF2408 at 54.344 kb on + strand, within GFF2408 at 54.621 kb on - strand, within GFF2408 at 55.080 kb on - strand, within GFF2408 at 55.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 53,661 + +0.4 53,662 - +1.2 53,726 + -0.1 53,726 + -0.1 53,729 + +0.1 53,729 + +0.2 53,729 + +0.5 53,730 - +0.1 53,733 - +0.2 53,831 + -0.7 53,832 - -0.2 53,912 - -0.1 53,912 - -0.4 53,915 + +1.3 53,934 + -0.1 54,040 + -0.7 54,041 - +1.1 54,041 - +0.0 54,041 - +0.6 54,221 + GFF2408 0.16 +0.5 54,263 + GFF2408 0.18 -0.7 54,264 - GFF2408 0.18 +0.4 54,264 - GFF2408 0.18 -0.2 54,264 - GFF2408 0.18 +1.2 54,344 + GFF2408 0.23 -0.0 54,621 - GFF2408 0.39 +1.2 55,080 - GFF2408 0.65 -0.5 55,759 + +1.1
Or see this region's nucleotide sequence