Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2367

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
6,692	+		GFF2366	0.79	+0.5
6,692	+		GFF2366	0.79	+0.1
6,692	+		GFF2366	0.79	+0.8
6,692	+		GFF2366	0.79	-0.2
6,692	+		GFF2366	0.79	-0.1
6,693	-		GFF2366	0.79	+0.2
6,693	-		GFF2366	0.79	+0.5
6,693	-		GFF2366	0.79	+0.1
6,741	+		GFF2366	0.88	-0.5
6,742	-		GFF2366	0.88	-0.3
6,742	-		GFF2366	0.88	-0.5
6,788	+				+1.5
6,788	+				-0.1
6,788	+				-0.8
6,789	-				+0.2
6,789	-				+0.2
6,789	-				-0.2
6,862	+				+0.1
6,862	+				-0.4
6,877	+				-1.3
6,877	+				-0.1
6,878	-				+0.1
6,878	-				+0.4
6,878	-				+0.2
6,878	-				+0.5
6,878	-				-1.0
6,928	-				+0.2
6,931	+				+0.1
7,070	+				-0.1
7,070	+				+0.4
7,070	+				+0.6
7,070	+				-0.0
7,070	+				+0.3
7,070	+				+1.2
7,070	+				+0.0
7,070	+				+0.1
7,071	-				-0.0
7,131	+				-0.2
7,131	+				-0.4
7,210	-				-0.7
7,587	+				-0.1
7,587	+				-0.2
7,588	-				-0.3
7,589	+				-0.3
7,589	+				-1.4
7,589	+				-1.9
7,589	+				-0.0
7,590	-				+0.1
7,590	-				+0.5
7,590	-				+0.4
7,590	-				-0.3
7,590	-				+0.4
7,590	-				-0.3
7,699	-		GFF2367	0.24	-1.1
7,744	+		GFF2367	0.32	-1.0
7,745	-		GFF2367	0.33	-1.0
7,745	-		GFF2367	0.33	-0.6
7,806	+		GFF2367	0.43	-0.7
7,806	+		GFF2367	0.43	-1.2
7,806	+		GFF2367	0.43	-0.4
7,806	+		GFF2367	0.43	-2.0
8,021	+		GFF2367	0.82	-0.1
8,021	+		GFF2367	0.82	-1.1
8,232	+				-0.3
8,422	+				+0.3
8,437	+				+0.1
8,437	+				+1.1
8,437	+				-1.4
8,446	+				-0.4
8,446	+				+0.4
8,446	+				-0.5
8,446	+				+0.4
8,446	+				-0.4
8,446	+				+0.0
8,446	+				-0.8
8,446	-				-0.1
8,447	-				+1.2
8,447	-				+0.3
8,470	+				+0.3
8,470	+				+0.7
8,470	+				-0.8
8,470	+				-0.0
8,470	+				+0.4
8,470	+				+0.4
8,471	-				-0.4
8,471	-				-1.9
8,471	-				-0.5
8,472	-				+0.2
8,490	+				+2.1
8,515	+				-0.3
8,515	+				-0.1
8,518	+				+0.1
8,518	+				-0.4
8,518	+				+0.1
8,518	+				+0.0
8,519	-				-0.2
8,519	-				+1.1
8,519	-				+0.0
8,519	-				+0.6
8,633	+		GFF2368	0.21	+1.5
8,634	-		GFF2368	0.22	+0.3
8,634	-		GFF2368	0.22	-0.3
8,676	+		GFF2368	0.46	-0.2
8,782	+				+0.7
8,783	-				-0.8
8,783	-				-0.3
8,791	+				+0.8
8,791	+				-0.4
8,823	-				+0.1