Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2307

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,189,723	+		GFF2305	0.90	-0.2
1,189,723	+		GFF2305	0.90	-0.4
1,189,723	+		GFF2305	0.90	+0.9
1,189,723	+		GFF2305	0.90	-0.8
1,189,724	-		GFF2305	0.90	-0.7
1,189,724	-		GFF2305	0.90	+0.7
1,189,807	+				-0.1
1,189,807	+				-0.0
1,189,808	-				+0.7
1,189,902	+				+0.5
1,189,902	+				-0.8
1,189,902	+				-0.0
1,189,903	-				+0.9
1,189,903	-				+1.1
1,189,927	+				-0.6
1,189,928	-				+0.2
1,189,928	-				-0.7
1,189,928	-				-0.5
1,190,238	-		GFF2306	0.47	+0.5
1,190,279	+		GFF2306	0.53	+0.1
1,190,513	+				+0.5
1,190,699	-		GFF2307	0.18	+0.5
1,190,878	+		GFF2307	0.43	-0.3
1,190,920	-		GFF2307	0.48	-0.2
1,190,920	-		GFF2307	0.48	-2.4
1,190,920	-		GFF2307	0.48	-0.0
1,190,920	-		GFF2307	0.48	-0.1
1,190,927	-		GFF2307	0.49	-0.3
1,190,989	+		GFF2307	0.58	-0.2
1,190,989	+		GFF2307	0.58	+0.1
1,190,989	+		GFF2307	0.58	+0.8
1,190,990	-		GFF2307	0.58	+0.2
1,191,223	+				+0.2
1,191,224	-				+0.9
1,191,224	-				+0.3
1,191,332	+				-0.2
1,191,333	-				-0.5
1,192,241	+		GFF2308	0.43	-0.3
1,192,241	+		GFF2308	0.43	+0.3
1,192,242	-		GFF2308	0.43	-0.8
1,192,242	-		GFF2308	0.43	-1.5
1,192,242	-		GFF2308	0.43	-0.7
1,192,242	-		GFF2308	0.43	+0.9