Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF218 and GFF219 are separated by 176 nucleotides GFF219 and GFF220 are separated by 53 nucleotides GFF220 and GFF221 are separated by 71 nucleotides
GFF218 - hypothetical protein, at 239,778 to 240,317
GFF218
GFF219 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 240,494 to 241,060
GFF219
GFF220 - FIG00977867: hypothetical protein, at 241,114 to 242,226
GFF220
GFF221 - YpfJ protein, zinc metalloprotease superfamily, at 242,298 to 243,200
GFF221
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 240.121 kb on + strand, within GFF218 at 240.122 kb on - strand, within GFF218 at 240.274 kb on + strand at 240.274 kb on + strand at 240.274 kb on + strand at 240.274 kb on + strand at 240.274 kb on + strand at 240.275 kb on - strand at 240.389 kb on + strand at 240.390 kb on - strand at 240.390 kb on - strand at 240.390 kb on - strand at 240.390 kb on - strand at 240.480 kb on + strand at 240.480 kb on + strand at 240.480 kb on + strand at 240.480 kb on + strand at 240.480 kb on + strand at 240.481 kb on - strand at 240.481 kb on - strand at 240.481 kb on - strand at 240.481 kb on - strand at 241.110 kb on + strand at 241.402 kb on + strand, within GFF220 at 241.402 kb on + strand, within GFF220 at 241.402 kb on + strand, within GFF220 at 241.403 kb on - strand, within GFF220 at 241.403 kb on - strand, within GFF220 at 241.510 kb on + strand, within GFF220 at 241.510 kb on + strand, within GFF220 at 241.510 kb on + strand, within GFF220 at 241.607 kb on - strand, within GFF220 at 241.607 kb on - strand, within GFF220 at 241.634 kb on - strand, within GFF220 at 241.634 kb on - strand, within GFF220 at 241.634 kb on - strand, within GFF220 at 241.637 kb on - strand, within GFF220 at 241.637 kb on - strand, within GFF220 at 241.637 kb on - strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.684 kb on + strand, within GFF220 at 241.685 kb on - strand, within GFF220 at 241.685 kb on - strand, within GFF220 at 241.685 kb on - strand, within GFF220 at 241.867 kb on + strand, within GFF220 at 241.867 kb on + strand, within GFF220 at 241.867 kb on + strand, within GFF220 at 242.041 kb on + strand, within GFF220 at 242.042 kb on - strand, within GFF220 at 242.042 kb on - strand, within GFF220 at 242.123 kb on - strand at 242.152 kb on + strand at 242.153 kb on - strand at 242.252 kb on + strand at 242.253 kb on - strand at 242.253 kb on - strand at 242.724 kb on + strand, within GFF221 at 242.725 kb on - strand, within GFF221 at 242.748 kb on + strand, within GFF221 at 242.748 kb on + strand, within GFF221 at 242.749 kb on - strand, within GFF221 at 242.766 kb on + strand, within GFF221 at 242.766 kb on + strand, within GFF221 at 242.817 kb on + strand, within GFF221 at 242.818 kb on - strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.914 kb on - strand, within GFF221 at 242.914 kb on - strand, within GFF221 at 243.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 240,121 + GFF218 0.64 -0.2 240,122 - GFF218 0.64 +0.1 240,274 + -0.4 240,274 + -0.1 240,274 + -0.2 240,274 + +0.1 240,274 + -1.0 240,275 - -0.2 240,389 + -0.4 240,390 - +0.4 240,390 - -0.3 240,390 - +0.7 240,390 - -0.3 240,480 + +0.7 240,480 + -0.2 240,480 + -0.7 240,480 + +0.0 240,480 + +0.3 240,481 - +0.7 240,481 - -0.1 240,481 - -0.1 240,481 - -1.9 241,110 + +0.2 241,402 + GFF220 0.26 +0.0 241,402 + GFF220 0.26 +0.6 241,402 + GFF220 0.26 -0.3 241,403 - GFF220 0.26 -2.1 241,403 - GFF220 0.26 -0.1 241,510 + GFF220 0.36 -0.1 241,510 + GFF220 0.36 +0.0 241,510 + GFF220 0.36 -0.5 241,607 - GFF220 0.44 +0.2 241,607 - GFF220 0.44 +0.8 241,634 - GFF220 0.47 +0.5 241,634 - GFF220 0.47 +0.3 241,634 - GFF220 0.47 -0.1 241,637 - GFF220 0.47 +0.3 241,637 - GFF220 0.47 -0.1 241,637 - GFF220 0.47 +0.7 241,684 + GFF220 0.51 -0.7 241,684 + GFF220 0.51 -0.4 241,684 + GFF220 0.51 +0.3 241,684 + GFF220 0.51 +0.9 241,684 + GFF220 0.51 -0.4 241,684 + GFF220 0.51 -0.3 241,684 + GFF220 0.51 -0.2 241,684 + GFF220 0.51 +0.1 241,684 + GFF220 0.51 -0.2 241,685 - GFF220 0.51 -0.3 241,685 - GFF220 0.51 -1.5 241,685 - GFF220 0.51 +0.1 241,867 + GFF220 0.68 -0.8 241,867 + GFF220 0.68 +0.1 241,867 + GFF220 0.68 -1.5 242,041 + GFF220 0.83 +0.3 242,042 - GFF220 0.83 -0.1 242,042 - GFF220 0.83 +1.7 242,123 - -0.1 242,152 + -0.1 242,153 - -0.4 242,252 + -0.5 242,253 - +0.8 242,253 - -0.7 242,724 + GFF221 0.47 -0.3 242,725 - GFF221 0.47 -0.4 242,748 + GFF221 0.50 -0.9 242,748 + GFF221 0.50 -0.2 242,749 - GFF221 0.50 -0.0 242,766 + GFF221 0.52 +0.9 242,766 + GFF221 0.52 +0.7 242,817 + GFF221 0.57 +0.5 242,818 - GFF221 0.58 +0.1 242,913 + GFF221 0.68 +0.7 242,913 + GFF221 0.68 -0.3 242,913 + GFF221 0.68 -1.1 242,914 - GFF221 0.68 -0.9 242,914 - GFF221 0.68 -0.4 243,182 - +1.2
Or see this region's nucleotide sequence