Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2192

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,081,121	+		GFF2191	0.70	-0.5
1,081,121	+		GFF2191	0.70	-0.6
1,081,122	-		GFF2191	0.70	+1.0
1,081,187	+		GFF2191	0.76	+0.6
1,081,340	+		GFF2191	0.90	+0.1
1,081,340	+		GFF2191	0.90	+0.2
1,081,340	+		GFF2191	0.90	-0.6
1,081,340	+		GFF2191	0.90	+1.3
1,081,340	+		GFF2191	0.90	+0.7
1,081,341	-		GFF2191	0.90	-0.5
1,081,341	-		GFF2191	0.90	+0.1
1,081,341	-		GFF2191	0.90	-1.7
1,081,341	-		GFF2191	0.90	+0.3
1,081,341	-		GFF2191	0.90	+0.6
1,081,525	+				-1.7
1,081,526	-				-0.3
1,081,526	-				-1.9
1,081,526	-				-0.0
1,082,101	+		GFF2192	0.67	+0.3
1,082,101	+		GFF2192	0.67	-1.5
1,082,101	+		GFF2192	0.67	-0.7
1,082,101	+		GFF2192	0.67	+0.1
1,082,102	-		GFF2192	0.67	-0.8
1,082,102	-		GFF2192	0.67	-0.3
1,082,102	-		GFF2192	0.67	+0.5
1,082,102	-		GFF2192	0.67	+0.3
1,082,210	-		GFF2192	0.78	+0.4
1,082,210	-		GFF2192	0.78	-0.3
1,082,221	+		GFF2192	0.79	-0.4
1,082,221	+		GFF2192	0.79	+0.6
1,082,221	+		GFF2192	0.79	-0.1
1,082,222	-		GFF2192	0.79	-0.4
1,082,222	-		GFF2192	0.79	-0.6
1,082,222	-		GFF2192	0.79	-0.6
1,082,222	-		GFF2192	0.79	+0.9
1,082,222	-		GFF2192	0.79	-0.1
1,082,478	+				-0.3
1,082,478	+				+0.1
1,082,478	+				+0.1
1,082,478	+				+0.2
1,082,478	+				+0.6
1,082,478	+				+0.9
1,082,478	+				+0.3
1,082,479	-				-0.2
1,082,479	-				-1.7
1,082,479	-				-0.2
1,082,479	-				+1.9
1,082,479	-				-0.0
1,082,595	+				+1.9
1,082,595	+				-0.3
1,082,595	+				+0.5
1,082,595	+				-0.2
1,082,596	-				+0.3
1,082,596	-				-0.7
1,082,610	+				-0.0
1,082,610	+				+0.4
1,082,610	+				+1.4
1,082,625	+				+0.2
1,082,625	+				-0.9
1,082,625	+				-0.1
1,082,625	+				-0.1
1,082,626	-				+0.5
1,082,626	-				+1.2
1,082,626	-				-0.2
1,082,626	-				-0.1
1,082,626	-				-0.5
1,082,626	-				-0.8
1,082,778	+		GFF2193	0.17	+0.0
1,082,778	+		GFF2193	0.17	+0.2
1,082,778	+		GFF2193	0.17	+0.1
1,082,778	+		GFF2193	0.17	+0.6
1,082,779	-		GFF2193	0.17	-1.4
1,082,793	+		GFF2193	0.18	+0.1
1,082,794	-		GFF2193	0.18	-0.3
1,082,794	-		GFF2193	0.18	-0.4
1,082,794	-		GFF2193	0.18	-0.0
1,082,830	-		GFF2193	0.21	+0.0
1,082,830	-		GFF2193	0.21	-1.0
1,082,847	+		GFF2193	0.22	-0.0
1,083,093	+		GFF2193	0.39	+1.1
1,083,093	+		GFF2193	0.39	-0.1
1,083,094	-		GFF2193	0.39	-0.1
1,083,094	-		GFF2193	0.39	-0.1
1,083,094	-		GFF2193	0.39	-0.1
1,083,108	+		GFF2193	0.40	+0.5
1,083,108	+		GFF2193	0.40	+0.2
1,083,108	+		GFF2193	0.40	+0.2
1,083,108	+		GFF2193	0.40	-0.0
1,083,108	+		GFF2193	0.40	+2.3
1,083,255	+		GFF2193	0.50	-0.1
1,083,291	+		GFF2193	0.52	+0.3
1,083,291	+		GFF2193	0.52	-0.9
1,083,291	+		GFF2193	0.52	-0.3
1,083,291	+		GFF2193	0.52	+0.7
1,083,292	-		GFF2193	0.52	-0.5
1,083,292	-		GFF2193	0.52	+0.0
1,083,292	-		GFF2193	0.52	-0.2
1,083,292	-		GFF2193	0.52	-0.1
1,083,292	-		GFF2193	0.52	-3.5
1,083,292	-		GFF2193	0.52	-0.1
1,083,358	-		GFF2193	0.57	-0.1