Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2082 and GFF2083 are separated by 134 nucleotides GFF2083 and GFF2084 are separated by 97 nucleotides GFF2084 and GFF2085 are separated by 13 nucleotides GFF2085 and GFF2086 are separated by 11 nucleotides GFF2086 and GFF2087 are separated by 503 nucleotides
GFF2082 - Mercuric resistance operon regulatory protein, at 969,003 to 969,440
GFF2082
GFF2083 - cellular communication/signal transduction, at 969,575 to 969,901
GFF2083
GFF2084 - Gfa-like protein, at 969,999 to 970,391
GFF2084
GFF2085 - hypothetical protein, at 970,405 to 970,842
GFF2085
GFF2086 - hypothetical protein, at 970,854 to 971,126
GFF2086
GFF2087 - Probable lipoprotein signal peptide, at 971,630 to 972,439
GFF2087
Position (kb) 970
971 Strain fitness (log2 ratio) -1
0
1 at 969.444 kb on + strand at 969.526 kb on + strand at 969.536 kb on + strand at 969.536 kb on + strand at 969.537 kb on - strand at 969.537 kb on - strand at 969.549 kb on + strand at 969.550 kb on - strand at 969.833 kb on + strand, within GFF2083 at 969.833 kb on + strand, within GFF2083 at 969.833 kb on + strand, within GFF2083 at 969.833 kb on + strand, within GFF2083 at 969.833 kb on + strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.834 kb on - strand, within GFF2083 at 969.839 kb on + strand, within GFF2083 at 969.839 kb on + strand, within GFF2083 at 969.839 kb on + strand, within GFF2083 at 969.839 kb on + strand, within GFF2083 at 969.839 kb on + strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.840 kb on - strand, within GFF2083 at 969.899 kb on + strand at 969.899 kb on + strand at 969.956 kb on + strand at 969.958 kb on + strand at 969.959 kb on - strand at 969.959 kb on - strand at 969.959 kb on - strand at 970.218 kb on + strand, within GFF2084 at 970.218 kb on + strand, within GFF2084 at 970.219 kb on - strand, within GFF2084 at 970.219 kb on - strand, within GFF2084 at 970.290 kb on + strand, within GFF2084 at 970.290 kb on + strand, within GFF2084 at 970.291 kb on - strand, within GFF2084 at 970.291 kb on - strand, within GFF2084 at 970.291 kb on - strand, within GFF2084 at 970.291 kb on - strand, within GFF2084 at 970.351 kb on - strand, within GFF2084 at 970.498 kb on + strand, within GFF2085 at 970.622 kb on - strand, within GFF2085 at 970.622 kb on - strand, within GFF2085 at 970.639 kb on + strand, within GFF2085 at 970.639 kb on + strand, within GFF2085 at 970.640 kb on - strand, within GFF2085 at 970.640 kb on - strand, within GFF2085 at 970.640 kb on - strand, within GFF2085 at 970.640 kb on - strand, within GFF2085 at 971.156 kb on + strand at 971.156 kb on + strand at 971.156 kb on + strand at 971.156 kb on + strand at 971.157 kb on - strand at 971.157 kb on - strand at 971.362 kb on - strand at 971.410 kb on + strand at 971.411 kb on - strand at 971.411 kb on - strand at 971.583 kb on - strand at 971.789 kb on + strand, within GFF2087 at 971.789 kb on + strand, within GFF2087 at 971.789 kb on + strand, within GFF2087 at 971.790 kb on - strand, within GFF2087 at 971.790 kb on - strand, within GFF2087 at 971.830 kb on + strand, within GFF2087 at 971.831 kb on - strand, within GFF2087
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 969,444 + +0.6 969,526 + -0.2 969,536 + +0.2 969,536 + +0.6 969,537 - +0.0 969,537 - +0.2 969,549 + +0.2 969,550 - +0.9 969,833 + GFF2083 0.79 +0.3 969,833 + GFF2083 0.79 +1.1 969,833 + GFF2083 0.79 +0.2 969,833 + GFF2083 0.79 +0.2 969,833 + GFF2083 0.79 +0.1 969,834 - GFF2083 0.79 +0.8 969,834 - GFF2083 0.79 -0.0 969,834 - GFF2083 0.79 +0.9 969,834 - GFF2083 0.79 -0.1 969,834 - GFF2083 0.79 +0.6 969,834 - GFF2083 0.79 -0.4 969,839 + GFF2083 0.81 -0.8 969,839 + GFF2083 0.81 +0.4 969,839 + GFF2083 0.81 +0.0 969,839 + GFF2083 0.81 -0.1 969,839 + GFF2083 0.81 +0.4 969,840 - GFF2083 0.81 -0.2 969,840 - GFF2083 0.81 -0.3 969,840 - GFF2083 0.81 -0.2 969,840 - GFF2083 0.81 -0.1 969,840 - GFF2083 0.81 -0.2 969,840 - GFF2083 0.81 +0.7 969,899 + -0.7 969,899 + +0.2 969,956 + -1.1 969,958 + +0.9 969,959 - -0.3 969,959 - +0.2 969,959 - -0.4 970,218 + GFF2084 0.56 +0.4 970,218 + GFF2084 0.56 +0.2 970,219 - GFF2084 0.56 -0.3 970,219 - GFF2084 0.56 -0.2 970,290 + GFF2084 0.74 -0.4 970,290 + GFF2084 0.74 -0.5 970,291 - GFF2084 0.74 -0.5 970,291 - GFF2084 0.74 +0.9 970,291 - GFF2084 0.74 -0.1 970,291 - GFF2084 0.74 +0.7 970,351 - GFF2084 0.90 +0.5 970,498 + GFF2085 0.21 -0.9 970,622 - GFF2085 0.50 +1.0 970,622 - GFF2085 0.50 -0.1 970,639 + GFF2085 0.53 +0.5 970,639 + GFF2085 0.53 +0.0 970,640 - GFF2085 0.54 +0.7 970,640 - GFF2085 0.54 +0.9 970,640 - GFF2085 0.54 +0.2 970,640 - GFF2085 0.54 -0.0 971,156 + -0.3 971,156 + -0.1 971,156 + -0.2 971,156 + +1.0 971,157 - -1.4 971,157 - -0.2 971,362 - +0.4 971,410 + -0.2 971,411 - -0.2 971,411 - -0.4 971,583 - -1.3 971,789 + GFF2087 0.20 +0.5 971,789 + GFF2087 0.20 -0.3 971,789 + GFF2087 0.20 +0.6 971,790 - GFF2087 0.20 +0.6 971,790 - GFF2087 0.20 +0.6 971,830 + GFF2087 0.25 +0.0 971,831 - GFF2087 0.25 -0.0
Or see this region's nucleotide sequence