Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF199

Experiment: Ying_Others16 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF198 and GFF199 overlap by 20 nucleotidesGFF199 and GFF200 overlap by 1 nucleotides GFF198 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 211,779 to 212,783 GFF198 GFF199 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 212,764 to 214,266 GFF199 GFF200 - FIG01198523: hypothetical protein, at 214,266 to 215,462 GFF200 Position (kb) 212 213 214 215Strain fitness (log2 ratio) -1 0 1at 211.847 kb on - strandat 212.036 kb on - strand, within GFF198at 212.036 kb on - strand, within GFF198at 212.078 kb on - strand, within GFF198at 212.078 kb on - strand, within GFF198at 212.252 kb on - strand, within GFF198at 212.255 kb on - strand, within GFF198at 212.318 kb on - strand, within GFF198at 212.948 kb on + strand, within GFF199at 212.948 kb on + strand, within GFF199at 212.949 kb on - strand, within GFF199at 212.949 kb on - strand, within GFF199at 214.159 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
remove
211,847 - -0.2
212,036 - GFF198 0.26 -0.5
212,036 - GFF198 0.26 -0.1
212,078 - GFF198 0.30 -0.0
212,078 - GFF198 0.30 +0.0
212,252 - GFF198 0.47 -0.3
212,255 - GFF198 0.47 +0.1
212,318 - GFF198 0.54 +0.6
212,948 + GFF199 0.12 +0.4
212,948 + GFF199 0.12 -0.3
212,949 - GFF199 0.12 -0.1
212,949 - GFF199 0.12 -0.9
214,159 + +0.1

Or see this region's nucleotide sequence