Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1975

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1974 and GFF1975 are separated by 344 nucleotidesGFF1975 and GFF1976 are separated by 64 nucleotides GFF1974 - Probable hemagglutinin-related transmembrane protein, at 847,964 to 849,601 GFF1974 GFF1975 - mandelate racemase/muconate lactonizing enzyme family protein, at 849,946 to 851,154 GFF1975 GFF1976 - Transcriptional regulator, at 851,219 to 852,163 GFF1976 Position (kb) 849 850 851 852Strain fitness (log2 ratio) -1 0 1 2at 848.957 kb on + strand, within GFF1974at 848.957 kb on + strand, within GFF1974at 848.958 kb on - strand, within GFF1974at 848.958 kb on - strand, within GFF1974at 849.095 kb on + strand, within GFF1974at 849.095 kb on + strand, within GFF1974at 849.119 kb on + strand, within GFF1974at 849.120 kb on - strand, within GFF1974at 849.158 kb on + strand, within GFF1974at 849.158 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.186 kb on + strand, within GFF1974at 849.487 kb on + strandat 849.487 kb on + strandat 849.488 kb on - strandat 849.488 kb on - strandat 849.509 kb on - strandat 849.545 kb on + strandat 849.545 kb on + strandat 849.546 kb on - strandat 850.028 kb on + strandat 850.028 kb on + strandat 850.028 kb on + strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.088 kb on + strand, within GFF1975at 850.089 kb on - strand, within GFF1975at 850.089 kb on - strand, within GFF1975at 850.211 kb on + strand, within GFF1975at 850.212 kb on - strand, within GFF1975at 850.226 kb on + strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.346 kb on + strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.376 kb on + strand, within GFF1975at 850.377 kb on - strand, within GFF1975at 850.403 kb on + strand, within GFF1975at 850.404 kb on - strand, within GFF1975at 850.580 kb on + strand, within GFF1975at 850.584 kb on - strand, within GFF1975at 850.598 kb on + strand, within GFF1975at 850.599 kb on - strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.649 kb on + strand, within GFF1975at 850.650 kb on - strand, within GFF1975at 850.700 kb on + strand, within GFF1975at 850.721 kb on + strand, within GFF1975at 850.722 kb on - strand, within GFF1975at 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.678 kb on + strand, within GFF1976at 851.679 kb on - strand, within GFF1976at 851.844 kb on - strand, within GFF1976

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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848,957 + GFF1974 0.61 -0.5
848,957 + GFF1974 0.61 -0.0
848,958 - GFF1974 0.61 +0.0
848,958 - GFF1974 0.61 +0.1
849,095 + GFF1974 0.69 -0.7
849,095 + GFF1974 0.69 -0.1
849,119 + GFF1974 0.71 +0.2
849,120 - GFF1974 0.71 -0.1
849,158 + GFF1974 0.73 +0.1
849,158 + GFF1974 0.73 -1.7
849,179 + GFF1974 0.74 +1.0
849,179 + GFF1974 0.74 -0.0
849,179 + GFF1974 0.74 -1.4
849,179 + GFF1974 0.74 -0.3
849,179 + GFF1974 0.74 +0.8
849,179 + GFF1974 0.74 +0.1
849,179 + GFF1974 0.74 -0.5
849,180 - GFF1974 0.74 +0.3
849,180 - GFF1974 0.74 -0.2
849,180 - GFF1974 0.74 -0.1
849,180 - GFF1974 0.74 +0.0
849,180 - GFF1974 0.74 +0.6
849,180 - GFF1974 0.74 +0.3
849,180 - GFF1974 0.74 +0.3
849,186 + GFF1974 0.75 -0.2
849,487 + +0.5
849,487 + -0.5
849,488 - -0.1
849,488 - +0.5
849,509 - +1.9
849,545 + -0.3
849,545 + +0.5
849,546 - -1.4
850,028 + -0.0
850,028 + +0.2
850,028 + -0.1
850,029 - +0.0
850,029 - +0.4
850,029 - -1.1
850,029 - +0.4
850,029 - -0.2
850,088 + GFF1975 0.12 -0.5
850,089 - GFF1975 0.12 +0.0
850,089 - GFF1975 0.12 -0.4
850,211 + GFF1975 0.22 -0.4
850,212 - GFF1975 0.22 +0.2
850,226 + GFF1975 0.23 -0.1
850,227 - GFF1975 0.23 +0.2
850,227 - GFF1975 0.23 +0.6
850,227 - GFF1975 0.23 -0.1
850,346 + GFF1975 0.33 +0.9
850,347 - GFF1975 0.33 +0.0
850,347 - GFF1975 0.33 +0.5
850,376 + GFF1975 0.36 -1.4
850,377 - GFF1975 0.36 -0.4
850,403 + GFF1975 0.38 -0.3
850,404 - GFF1975 0.38 +1.0
850,580 + GFF1975 0.52 -0.3
850,584 - GFF1975 0.53 +1.1
850,598 + GFF1975 0.54 +0.9
850,599 - GFF1975 0.54 +0.2
850,646 + GFF1975 0.58 -0.4
850,646 + GFF1975 0.58 -0.3
850,646 + GFF1975 0.58 -0.6
850,646 + GFF1975 0.58 -0.2
850,647 - GFF1975 0.58 +0.3
850,647 - GFF1975 0.58 +0.1
850,647 - GFF1975 0.58 +0.6
850,647 - GFF1975 0.58 +0.3
850,647 - GFF1975 0.58 +1.4
850,647 - GFF1975 0.58 -0.1
850,647 - GFF1975 0.58 +0.8
850,647 - GFF1975 0.58 -0.2
850,647 - GFF1975 0.58 +0.6
850,649 + GFF1975 0.58 +1.1
850,650 - GFF1975 0.58 +0.9
850,700 + GFF1975 0.62 -0.2
850,721 + GFF1975 0.64 +0.3
850,722 - GFF1975 0.64 -0.1
851,051 + -0.8
851,051 + -0.5
851,051 + -0.5
851,051 + -0.1
851,051 + -0.6
851,051 + -0.1
851,052 - -0.7
851,052 - -0.0
851,052 - +0.1
851,052 - -0.0
851,196 + +0.1
851,196 + -0.3
851,196 + -0.2
851,196 + +0.3
851,196 + -0.6
851,197 - -0.8
851,197 - +1.1
851,197 - +0.2
851,197 - -0.1
851,197 - -0.2
851,197 - -0.9
851,197 - -0.4
851,197 - +0.9
851,197 - +0.3
851,202 + -0.1
851,202 + +1.2
851,202 + +0.1
851,202 + +0.5
851,202 + +1.3
851,203 - +0.2
851,203 - +0.0
851,203 - -0.2
851,203 - -0.7
851,678 + GFF1976 0.49 +0.3
851,679 - GFF1976 0.49 +0.7
851,844 - GFF1976 0.66 -0.4

Or see this region's nucleotide sequence