Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1916

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1915 and GFF1916 are separated by 209 nucleotidesGFF1916 and GFF1917 are separated by 10 nucleotides GFF1915 - Alanine racemase (EC 5.1.1.1), at 788,511 to 789,623 GFF1915 GFF1916 - Probable transmembrane protein, at 789,833 to 791,104 GFF1916 GFF1917 - twitching motility protein PilG, at 791,115 to 792,326 GFF1917 Position (kb) 789 790 791 792Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 789.727 kb on + strandat 789.727 kb on + strandat 789.727 kb on + strandat 789.728 kb on - strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.146 kb on - strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.556 kb on + strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.592 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 791.102 kb on + strandat 791.103 kb on - strandat 791.182 kb on + strandat 791.182 kb on + strandat 791.183 kb on - strandat 791.183 kb on - strandat 791.183 kb on - strandat 791.215 kb on + strandat 791.216 kb on - strandat 791.384 kb on - strand, within GFF1917at 791.449 kb on + strand, within GFF1917at 791.450 kb on - strand, within GFF1917at 791.450 kb on - strand, within GFF1917

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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789,727 + -0.4
789,727 + -0.1
789,727 + -0.1
789,728 - -0.1
789,848 + -0.4
789,848 + -0.6
789,848 + -0.6
789,848 + -2.2
789,848 + -3.2
789,849 - +0.1
789,849 - -2.1
789,849 - -1.6
789,849 - -3.5
789,983 + GFF1916 0.12 -0.9
789,983 + GFF1916 0.12 -3.1
789,983 + GFF1916 0.12 -2.0
789,983 + GFF1916 0.12 -4.7
789,983 + GFF1916 0.12 -2.5
789,983 + GFF1916 0.12 -3.2
789,983 + GFF1916 0.12 -4.3
789,983 + GFF1916 0.12 -2.1
789,984 - GFF1916 0.12 -3.8
789,984 - GFF1916 0.12 -4.1
789,984 - GFF1916 0.12 -3.5
789,984 - GFF1916 0.12 -4.2
789,984 - GFF1916 0.12 -3.3
789,984 - GFF1916 0.12 -4.0
789,984 - GFF1916 0.12 -2.4
789,984 - GFF1916 0.12 -3.5
789,984 - GFF1916 0.12 -2.8
789,984 - GFF1916 0.12 -2.0
789,984 - GFF1916 0.12 -4.6
789,984 - GFF1916 0.12 -1.9
789,984 - GFF1916 0.12 -3.6
789,984 - GFF1916 0.12 -3.4
790,115 + GFF1916 0.22 -4.1
790,115 + GFF1916 0.22 -2.9
790,115 + GFF1916 0.22 -3.1
790,115 + GFF1916 0.22 -1.8
790,115 + GFF1916 0.22 -3.7
790,116 - GFF1916 0.22 -3.7
790,116 - GFF1916 0.22 -5.3
790,116 - GFF1916 0.22 -2.1
790,116 - GFF1916 0.22 -4.3
790,116 - GFF1916 0.22 -4.2
790,116 - GFF1916 0.22 -3.5
790,116 - GFF1916 0.22 -0.1
790,145 + GFF1916 0.25 -3.5
790,145 + GFF1916 0.25 -3.5
790,146 - GFF1916 0.25 -1.4
790,160 + GFF1916 0.26 -3.6
790,160 + GFF1916 0.26 -4.2
790,160 + GFF1916 0.26 -2.4
790,160 + GFF1916 0.26 -3.4
790,161 - GFF1916 0.26 -1.1
790,161 - GFF1916 0.26 -3.5
790,161 - GFF1916 0.26 -1.2
790,161 - GFF1916 0.26 -3.3
790,161 - GFF1916 0.26 -0.1
790,367 + GFF1916 0.42 -2.6
790,367 + GFF1916 0.42 +0.9
790,367 + GFF1916 0.42 -3.5
790,367 + GFF1916 0.42 -2.6
790,367 + GFF1916 0.42 -3.2
790,367 + GFF1916 0.42 -2.2
790,368 - GFF1916 0.42 -3.2
790,368 - GFF1916 0.42 -3.6
790,368 - GFF1916 0.42 -2.4
790,368 - GFF1916 0.42 -4.1
790,368 - GFF1916 0.42 -0.1
790,368 - GFF1916 0.42 -0.6
790,368 - GFF1916 0.42 -3.7
790,368 - GFF1916 0.42 -4.0
790,556 + GFF1916 0.57 -3.0
790,557 - GFF1916 0.57 -3.8
790,557 - GFF1916 0.57 -3.4
790,557 - GFF1916 0.57 -2.6
790,592 + GFF1916 0.60 -2.8
790,928 + GFF1916 0.86 -2.1
790,928 + GFF1916 0.86 -3.5
790,928 + GFF1916 0.86 -2.1
790,928 + GFF1916 0.86 -3.1
790,928 + GFF1916 0.86 -1.9
790,928 + GFF1916 0.86 -3.8
790,928 + GFF1916 0.86 -4.0
790,929 - GFF1916 0.86 -2.0
790,929 - GFF1916 0.86 -0.6
790,929 - GFF1916 0.86 -3.8
790,929 - GFF1916 0.86 -3.8
791,102 + -0.1
791,103 - +0.5
791,182 + -0.1
791,182 + +0.2
791,183 - +0.3
791,183 - +0.4
791,183 - +0.3
791,215 + -1.6
791,216 - -0.3
791,384 - GFF1917 0.22 +0.7
791,449 + GFF1917 0.28 -0.2
791,450 - GFF1917 0.28 +0.3
791,450 - GFF1917 0.28 +0.8

Or see this region's nucleotide sequence