Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1857 and GFF1858 overlap by 4 nucleotides GFF1858 and GFF1859 overlap by 4 nucleotides
GFF1857 - SAM-dependent methyltransferases, at 721,055 to 721,963
GFF1857
GFF1858 - glycosyl transferase family 2, at 721,960 to 722,808
GFF1858
GFF1859 - CgeB family protein, at 722,805 to 723,941
GFF1859
Position (kb) 721
722
723 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.578 kb on + strand, within GFF1858 at 722.819 kb on - strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.857 kb on - strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.292 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.469 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.804 kb on + strand, within GFF1859 at 723.805 kb on - strand, within GFF1859 at 723.805 kb on - strand, within GFF1859
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 721,002 - +0.1 721,002 - +0.4 721,002 - -0.8 721,002 - -0.6 721,097 + -0.7 721,097 + -1.1 721,097 + -1.4 721,098 - +1.3 721,098 - -1.1 721,098 - -0.6 721,098 - -1.1 721,098 - -1.2 721,106 + -0.1 721,106 + -0.3 721,106 + +0.0 721,106 + -0.8 721,106 + -0.1 721,106 + -0.3 721,106 + -0.1 721,106 + -2.2 721,106 + -0.4 721,106 + -1.1 721,106 + -0.0 721,107 - -0.3 721,107 - -1.3 721,107 - -0.6 721,107 - +0.4 721,107 - -0.7 721,107 - +0.0 721,107 - -0.6 721,107 - -0.6 721,107 - -0.2 721,107 - -0.7 721,109 + +0.4 721,109 + -1.5 721,109 + -1.4 721,220 + GFF1857 0.18 +0.5 721,220 + GFF1857 0.18 -0.2 721,220 + GFF1857 0.18 -0.2 721,220 + GFF1857 0.18 -0.9 721,221 - GFF1857 0.18 -0.6 721,221 - GFF1857 0.18 -0.4 721,221 - GFF1857 0.18 +0.5 721,221 - GFF1857 0.18 +0.7 721,449 + GFF1857 0.43 -2.1 721,449 + GFF1857 0.43 -0.6 721,450 - GFF1857 0.43 -0.1 721,450 - GFF1857 0.43 +0.5 721,450 - GFF1857 0.43 +0.5 721,587 - GFF1857 0.59 -0.7 721,587 - GFF1857 0.59 -0.9 722,533 + GFF1858 0.67 -3.0 722,533 + GFF1858 0.67 -5.9 722,533 + GFF1858 0.67 -1.4 722,534 - GFF1858 0.68 -6.7 722,534 - GFF1858 0.68 -1.9 722,534 - GFF1858 0.68 -3.7 722,534 - GFF1858 0.68 -5.5 722,534 - GFF1858 0.68 -4.5 722,545 + GFF1858 0.69 -2.5 722,545 + GFF1858 0.69 -1.9 722,546 - GFF1858 0.69 -3.9 722,546 - GFF1858 0.69 -0.1 722,578 + GFF1858 0.73 -1.6 722,819 - -1.1 722,829 + -5.7 722,829 + -4.0 722,829 + -4.1 722,829 + -1.1 722,829 + -3.3 722,829 + -3.7 722,829 + -4.2 722,829 + -4.0 722,829 + -2.8 722,830 - -1.9 722,830 - -3.4 722,830 - -3.7 722,830 - -3.6 722,830 - -5.3 722,830 - -0.1 722,830 - -3.9 722,832 + -2.4 722,832 + -3.7 722,832 + -0.1 722,832 + -4.1 722,832 + -7.3 722,832 + -2.2 722,832 + -5.1 722,832 + -2.2 722,832 + -3.1 722,833 - -5.5 722,833 - -4.7 722,833 - -4.2 722,833 - -3.2 722,833 - -6.1 722,833 - -4.5 722,857 - -2.6 722,889 + -0.6 722,889 + -1.4 722,889 + -3.5 722,889 + -7.0 722,889 + -6.1 722,889 + -4.7 722,943 + GFF1859 0.12 -0.1 722,943 + GFF1859 0.12 -1.1 722,943 + GFF1859 0.12 -3.9 722,944 - GFF1859 0.12 -6.8 722,944 - GFF1859 0.12 -2.1 722,944 - GFF1859 0.12 -3.9 723,174 + GFF1859 0.32 -3.4 723,174 + GFF1859 0.32 -1.1 723,174 + GFF1859 0.32 -4.9 723,175 - GFF1859 0.33 -1.1 723,175 - GFF1859 0.33 -0.6 723,175 - GFF1859 0.33 -1.9 723,228 + GFF1859 0.37 -4.1 723,228 + GFF1859 0.37 -4.3 723,228 + GFF1859 0.37 -4.9 723,228 + GFF1859 0.37 -1.6 723,228 + GFF1859 0.37 -2.8 723,228 + GFF1859 0.37 -6.2 723,229 - GFF1859 0.37 -4.9 723,229 - GFF1859 0.37 -2.9 723,229 - GFF1859 0.37 -6.7 723,291 + GFF1859 0.43 -0.4 723,291 + GFF1859 0.43 -3.1 723,292 - GFF1859 0.43 -3.1 723,361 - GFF1859 0.49 -4.7 723,361 - GFF1859 0.49 -3.0 723,361 - GFF1859 0.49 -1.9 723,361 - GFF1859 0.49 -2.8 723,469 + GFF1859 0.58 -1.6 723,483 + GFF1859 0.60 -4.4 723,483 + GFF1859 0.60 -3.6 723,483 + GFF1859 0.60 -6.0 723,483 + GFF1859 0.60 -4.5 723,594 + GFF1859 0.69 -5.4 723,594 + GFF1859 0.69 -2.4 723,594 + GFF1859 0.69 -2.1 723,594 + GFF1859 0.69 -4.7 723,594 + GFF1859 0.69 -2.5 723,594 + GFF1859 0.69 -2.2 723,594 + GFF1859 0.69 -1.9 723,594 + GFF1859 0.69 -5.1 723,594 + GFF1859 0.69 -3.0 723,594 + GFF1859 0.69 -2.9 723,594 + GFF1859 0.69 -6.1 723,594 + GFF1859 0.69 -3.4 723,594 + GFF1859 0.69 -6.9 723,595 - GFF1859 0.69 -0.6 723,595 - GFF1859 0.69 -1.9 723,595 - GFF1859 0.69 -3.7 723,595 - GFF1859 0.69 -5.1 723,595 - GFF1859 0.69 -2.1 723,595 - GFF1859 0.69 -1.4 723,675 + GFF1859 0.77 -2.1 723,675 + GFF1859 0.77 -5.4 723,676 - GFF1859 0.77 -5.1 723,676 - GFF1859 0.77 -0.6 723,765 + GFF1859 0.84 -5.5 723,765 + GFF1859 0.84 -3.9 723,765 + GFF1859 0.84 -3.1 723,765 + GFF1859 0.84 -1.9 723,765 + GFF1859 0.84 -6.8 723,765 + GFF1859 0.84 -3.7 723,804 + GFF1859 0.88 -6.6 723,805 - GFF1859 0.88 -2.1 723,805 - GFF1859 0.88 -4.0
Or see this region's nucleotide sequence