Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1855 and GFF1856 are separated by 0 nucleotides GFF1856 and GFF1857 are separated by 130 nucleotides
GFF1855 - N-acetylneuraminate synthase (EC 2.5.1.56), at 717,517 to 719,400
GFF1855
GFF1856 - hypothetical protein, at 719,401 to 720,924
GFF1856
GFF1857 - SAM-dependent methyltransferases, at 721,055 to 721,963
GFF1857
Position (kb) 719
720
721 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.522 kb on - strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.915 kb on + strand, within GFF1855 at 718.915 kb on + strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.138 kb on - strand, within GFF1855 at 719.138 kb on - strand, within GFF1855 at 719.161 kb on + strand, within GFF1855 at 719.161 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.377 kb on + strand at 719.378 kb on - strand at 719.378 kb on - strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.429 kb on - strand at 719.429 kb on - strand at 719.429 kb on - strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.468 kb on - strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.591 kb on - strand, within GFF1856 at 719.591 kb on - strand, within GFF1856 at 719.722 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.846 kb on - strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.182 kb on - strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.478 kb on + strand, within GFF1856 at 720.478 kb on + strand, within GFF1856 at 720.479 kb on - strand, within GFF1856 at 720.479 kb on - strand, within GFF1856 at 720.479 kb on - strand, within GFF1856 at 720.479 kb on - strand, within GFF1856 at 720.479 kb on - strand, within GFF1856 at 720.673 kb on + strand, within GFF1856 at 720.674 kb on - strand, within GFF1856 at 720.674 kb on - strand, within GFF1856 at 720.814 kb on + strand at 720.876 kb on - strand at 720.876 kb on - strand at 720.876 kb on - strand at 720.898 kb on + strand at 720.922 kb on + strand at 720.923 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.002 kb on - strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.097 kb on + strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.098 kb on - strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.106 kb on + strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.107 kb on - strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.109 kb on + strand at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.220 kb on + strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.221 kb on - strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.449 kb on + strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.450 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857 at 721.587 kb on - strand, within GFF1857
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 718,519 + GFF1855 0.53 -4.1 718,519 + GFF1855 0.53 -5.7 718,519 + GFF1855 0.53 -1.9 718,519 + GFF1855 0.53 -5.2 718,520 - GFF1855 0.53 -4.1 718,520 - GFF1855 0.53 -6.0 718,520 - GFF1855 0.53 -3.1 718,520 - GFF1855 0.53 -6.9 718,520 - GFF1855 0.53 -2.1 718,520 - GFF1855 0.53 -2.9 718,522 - GFF1855 0.53 -1.6 718,627 + GFF1855 0.59 -3.9 718,627 + GFF1855 0.59 -1.1 718,627 + GFF1855 0.59 -3.9 718,627 + GFF1855 0.59 -3.3 718,628 - GFF1855 0.59 -3.3 718,628 - GFF1855 0.59 -8.0 718,628 - GFF1855 0.59 -1.1 718,628 - GFF1855 0.59 -3.8 718,628 - GFF1855 0.59 -3.7 718,628 - GFF1855 0.59 -4.8 718,628 - GFF1855 0.59 -2.5 718,628 - GFF1855 0.59 -1.4 718,628 - GFF1855 0.59 -4.7 718,628 - GFF1855 0.59 -2.8 718,628 - GFF1855 0.59 -1.4 718,628 - GFF1855 0.59 -2.1 718,628 - GFF1855 0.59 -3.9 718,915 + GFF1855 0.74 -6.5 718,915 + GFF1855 0.74 -3.8 718,916 - GFF1855 0.74 -2.5 718,916 - GFF1855 0.74 -2.8 718,916 - GFF1855 0.74 -1.6 718,916 - GFF1855 0.74 -2.6 719,017 + GFF1855 0.80 -3.5 719,017 + GFF1855 0.80 -3.0 719,017 + GFF1855 0.80 -0.6 719,017 + GFF1855 0.80 -5.6 719,017 + GFF1855 0.80 -4.2 719,017 + GFF1855 0.80 -5.5 719,017 + GFF1855 0.80 -4.6 719,017 + GFF1855 0.80 -2.1 719,018 - GFF1855 0.80 -4.1 719,018 - GFF1855 0.80 -4.2 719,018 - GFF1855 0.80 -4.3 719,018 - GFF1855 0.80 -1.9 719,018 - GFF1855 0.80 -2.2 719,128 + GFF1855 0.86 -3.2 719,128 + GFF1855 0.86 -4.6 719,128 + GFF1855 0.86 -6.9 719,128 + GFF1855 0.86 -5.4 719,128 + GFF1855 0.86 -6.4 719,129 - GFF1855 0.86 -2.4 719,129 - GFF1855 0.86 -4.6 719,129 - GFF1855 0.86 -5.8 719,129 - GFF1855 0.86 -2.4 719,129 - GFF1855 0.86 -1.6 719,137 + GFF1855 0.86 -3.0 719,137 + GFF1855 0.86 -4.0 719,137 + GFF1855 0.86 -0.6 719,137 + GFF1855 0.86 -4.6 719,137 + GFF1855 0.86 -2.6 719,138 - GFF1855 0.86 -5.3 719,138 - GFF1855 0.86 -2.5 719,161 + GFF1855 0.87 -4.5 719,161 + GFF1855 0.87 -3.1 719,182 + GFF1855 0.88 -4.0 719,182 + GFF1855 0.88 -5.3 719,182 + GFF1855 0.88 -2.5 719,182 + GFF1855 0.88 -4.1 719,182 + GFF1855 0.88 -3.7 719,183 - GFF1855 0.88 -3.9 719,183 - GFF1855 0.88 -5.9 719,183 - GFF1855 0.88 -1.6 719,183 - GFF1855 0.88 -1.6 719,183 - GFF1855 0.88 -6.9 719,377 + -6.1 719,378 - -3.4 719,378 - -5.7 719,398 + -4.3 719,398 + -5.3 719,398 + -2.6 719,398 + -5.5 719,398 + -5.5 719,398 + -2.1 719,398 + -3.5 719,398 + -2.1 719,398 + -1.6 719,398 + -5.4 719,398 + -3.2 719,399 - -3.7 719,399 - -5.1 719,399 - -2.2 719,399 - -4.8 719,399 - -1.9 719,399 - -4.2 719,399 - -2.6 719,399 - -2.9 719,399 - -5.2 719,399 - -1.4 719,399 - -1.1 719,428 + -4.9 719,428 + -1.6 719,428 + -0.7 719,428 + -3.0 719,428 + +0.9 719,429 - -3.1 719,429 - -4.7 719,429 - -2.5 719,467 + -6.1 719,467 + -3.0 719,467 + -6.2 719,467 + -2.2 719,467 + -1.4 719,467 + -6.7 719,467 + -2.5 719,467 + -5.0 719,468 - -0.6 719,551 + -3.8 719,551 + -4.0 719,551 + -1.1 719,551 + -4.6 719,551 + -6.1 719,551 + -5.8 719,551 + -1.9 719,551 + -4.8 719,552 - -2.8 719,552 - -1.9 719,552 - -5.2 719,552 - -2.5 719,590 + GFF1856 0.12 -3.1 719,590 + GFF1856 0.12 -1.9 719,590 + GFF1856 0.12 -5.9 719,590 + GFF1856 0.12 -3.2 719,591 - GFF1856 0.12 -3.1 719,591 - GFF1856 0.12 -4.4 719,722 + GFF1856 0.21 -4.0 719,743 + GFF1856 0.22 -6.0 719,743 + GFF1856 0.22 -5.6 719,743 + GFF1856 0.22 -1.6 719,743 + GFF1856 0.22 -6.6 719,743 + GFF1856 0.22 -4.6 719,743 + GFF1856 0.22 -3.3 719,743 + GFF1856 0.22 -3.0 719,743 + GFF1856 0.22 -0.6 719,744 - GFF1856 0.23 -2.1 719,744 - GFF1856 0.23 -5.2 719,744 - GFF1856 0.23 -1.6 719,744 - GFF1856 0.23 -3.3 719,744 - GFF1856 0.23 -4.5 719,744 - GFF1856 0.23 -3.8 719,744 - GFF1856 0.23 -1.6 719,744 - GFF1856 0.23 -6.1 719,846 - GFF1856 0.29 -3.1 719,884 + GFF1856 0.32 -6.0 719,884 + GFF1856 0.32 -4.9 719,884 + GFF1856 0.32 -2.5 719,885 - GFF1856 0.32 -3.8 719,885 - GFF1856 0.32 -4.9 719,885 - GFF1856 0.32 -2.6 719,890 + GFF1856 0.32 -6.3 719,890 + GFF1856 0.32 -3.8 719,890 + GFF1856 0.32 -8.5 719,891 - GFF1856 0.32 -5.4 719,891 - GFF1856 0.32 -3.4 719,891 - GFF1856 0.32 -4.8 720,154 + GFF1856 0.49 -3.6 720,154 + GFF1856 0.49 -5.5 720,154 + GFF1856 0.49 -4.7 720,154 + GFF1856 0.49 -2.6 720,154 + GFF1856 0.49 -3.3 720,154 + GFF1856 0.49 -3.1 720,154 + GFF1856 0.49 -1.6 720,154 + GFF1856 0.49 -3.0 720,154 + GFF1856 0.49 -0.6 720,155 - GFF1856 0.49 -3.1 720,155 - GFF1856 0.49 -5.7 720,155 - GFF1856 0.49 -1.6 720,155 - GFF1856 0.49 -3.0 720,155 - GFF1856 0.49 -2.5 720,155 - GFF1856 0.49 -2.1 720,155 - GFF1856 0.49 -4.3 720,182 - GFF1856 0.51 -4.0 720,397 + GFF1856 0.65 -6.4 720,397 + GFF1856 0.65 -3.4 720,397 + GFF1856 0.65 -3.9 720,398 - GFF1856 0.65 -1.8 720,398 - GFF1856 0.65 -3.7 720,398 - GFF1856 0.65 -1.6 720,398 - GFF1856 0.65 -2.2 720,398 - GFF1856 0.65 -1.1 720,398 - GFF1856 0.65 -4.0 720,478 + GFF1856 0.71 -4.6 720,478 + GFF1856 0.71 -6.3 720,479 - GFF1856 0.71 -2.8 720,479 - GFF1856 0.71 -4.2 720,479 - GFF1856 0.71 -6.0 720,479 - GFF1856 0.71 -2.2 720,479 - GFF1856 0.71 -1.4 720,673 + GFF1856 0.83 -3.1 720,674 - GFF1856 0.84 -6.0 720,674 - GFF1856 0.84 -3.5 720,814 + -1.1 720,876 - -0.1 720,876 - -1.7 720,876 - -1.0 720,898 + -0.6 720,922 + -1.9 720,923 - -0.1 721,002 - +0.1 721,002 - +0.4 721,002 - -0.8 721,002 - -0.6 721,097 + -0.7 721,097 + -1.1 721,097 + -1.4 721,098 - +1.3 721,098 - -1.1 721,098 - -0.6 721,098 - -1.1 721,098 - -1.2 721,106 + -0.1 721,106 + -0.3 721,106 + +0.0 721,106 + -0.8 721,106 + -0.1 721,106 + -0.3 721,106 + -0.1 721,106 + -2.2 721,106 + -0.4 721,106 + -1.1 721,106 + -0.0 721,107 - -0.3 721,107 - -1.3 721,107 - -0.6 721,107 - +0.4 721,107 - -0.7 721,107 - +0.0 721,107 - -0.6 721,107 - -0.6 721,107 - -0.2 721,107 - -0.7 721,109 + +0.4 721,109 + -1.5 721,109 + -1.4 721,220 + GFF1857 0.18 +0.5 721,220 + GFF1857 0.18 -0.2 721,220 + GFF1857 0.18 -0.2 721,220 + GFF1857 0.18 -0.9 721,221 - GFF1857 0.18 -0.6 721,221 - GFF1857 0.18 -0.4 721,221 - GFF1857 0.18 +0.5 721,221 - GFF1857 0.18 +0.7 721,449 + GFF1857 0.43 -2.1 721,449 + GFF1857 0.43 -0.6 721,450 - GFF1857 0.43 -0.1 721,450 - GFF1857 0.43 +0.5 721,450 - GFF1857 0.43 +0.5 721,587 - GFF1857 0.59 -0.7 721,587 - GFF1857 0.59 -0.9
Or see this region's nucleotide sequence