Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1853 and GFF1854 are separated by 92 nucleotides GFF1854 and GFF1855 are separated by 20 nucleotides GFF1855 and GFF1856 are separated by 0 nucleotides
GFF1853 - N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43), at 715,845 to 716,537
GFF1853
GFF1854 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 716,630 to 717,496
GFF1854
GFF1855 - N-acetylneuraminate synthase (EC 2.5.1.56), at 717,517 to 719,400
GFF1855
GFF1856 - hypothetical protein, at 719,401 to 720,924
GFF1856
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 716.642 kb on + strand at 716.643 kb on - strand at 716.643 kb on - strand at 716.909 kb on + strand, within GFF1854 at 716.910 kb on - strand, within GFF1854 at 717.043 kb on + strand, within GFF1854 at 717.172 kb on + strand, within GFF1854 at 717.172 kb on + strand, within GFF1854 at 717.222 kb on - strand, within GFF1854 at 717.222 kb on - strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.322 kb on + strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.439 kb on + strand at 717.440 kb on - strand at 717.440 kb on - strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.730 kb on + strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.061 kb on - strand, within GFF1855 at 718.061 kb on - strand, within GFF1855 at 718.093 kb on + strand, within GFF1855 at 718.094 kb on - strand, within GFF1855 at 718.094 kb on - strand, within GFF1855 at 718.132 kb on + strand, within GFF1855 at 718.133 kb on - strand, within GFF1855 at 718.133 kb on - strand, within GFF1855 at 718.133 kb on - strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.519 kb on + strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.520 kb on - strand, within GFF1855 at 718.522 kb on - strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.627 kb on + strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.628 kb on - strand, within GFF1855 at 718.915 kb on + strand, within GFF1855 at 718.915 kb on + strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 718.916 kb on - strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.017 kb on + strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.018 kb on - strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.128 kb on + strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.129 kb on - strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.137 kb on + strand, within GFF1855 at 719.138 kb on - strand, within GFF1855 at 719.138 kb on - strand, within GFF1855 at 719.161 kb on + strand, within GFF1855 at 719.161 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.182 kb on + strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.183 kb on - strand, within GFF1855 at 719.377 kb on + strand at 719.378 kb on - strand at 719.378 kb on - strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.398 kb on + strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.399 kb on - strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.428 kb on + strand at 719.429 kb on - strand at 719.429 kb on - strand at 719.429 kb on - strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.467 kb on + strand at 719.468 kb on - strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.551 kb on + strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.552 kb on - strand at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.590 kb on + strand, within GFF1856 at 719.591 kb on - strand, within GFF1856 at 719.591 kb on - strand, within GFF1856 at 719.722 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.743 kb on + strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.744 kb on - strand, within GFF1856 at 719.846 kb on - strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.884 kb on + strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.885 kb on - strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.890 kb on + strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 719.891 kb on - strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.154 kb on + strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.155 kb on - strand, within GFF1856 at 720.182 kb on - strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.397 kb on + strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856 at 720.398 kb on - strand, within GFF1856
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 716,642 + -4.0 716,643 - -1.2 716,643 - -5.6 716,909 + GFF1854 0.32 -2.1 716,910 - GFF1854 0.32 -1.4 717,043 + GFF1854 0.48 -3.4 717,172 + GFF1854 0.63 -3.7 717,172 + GFF1854 0.63 -4.3 717,222 - GFF1854 0.68 -3.8 717,222 - GFF1854 0.68 -5.2 717,260 + GFF1854 0.73 -5.0 717,260 + GFF1854 0.73 -1.4 717,260 + GFF1854 0.73 -4.3 717,260 + GFF1854 0.73 -3.2 717,260 + GFF1854 0.73 -2.2 717,260 + GFF1854 0.73 -3.8 717,322 + GFF1854 0.80 -5.3 717,323 - GFF1854 0.80 -4.6 717,323 - GFF1854 0.80 -3.6 717,323 - GFF1854 0.80 -2.6 717,323 - GFF1854 0.80 -3.1 717,323 - GFF1854 0.80 -3.5 717,439 + -3.7 717,440 - -4.7 717,440 - -3.7 717,479 + -6.5 717,479 + -2.9 717,479 + -3.5 717,479 + -2.5 717,480 - -3.0 717,480 - -6.2 717,480 - -2.5 717,480 - -2.9 717,553 + -3.8 717,553 + -3.3 717,553 + -0.6 717,553 + -4.3 717,553 + -4.6 717,553 + -1.1 717,553 + -3.9 717,553 + -2.4 717,553 + -4.2 717,554 - -4.8 717,554 - -5.7 717,554 - -1.6 717,554 - -4.9 717,554 - -2.8 717,554 - -3.6 717,554 - -2.6 717,554 - -2.2 717,554 - -5.6 717,679 + -2.6 717,679 + -3.2 717,679 + -3.4 717,679 + -6.4 717,679 + -3.0 717,679 + -3.0 717,679 + -5.3 717,679 + -5.3 717,679 + -6.2 717,679 + -0.6 717,679 + -3.6 717,679 + -4.6 717,679 + -4.2 717,680 - -1.9 717,680 - -6.6 717,680 - -1.6 717,680 - -1.4 717,680 - -5.7 717,680 - -6.3 717,680 - -4.2 717,680 - -3.3 717,730 + GFF1855 0.11 -4.8 717,731 - GFF1855 0.11 -2.9 717,731 - GFF1855 0.11 -2.8 717,731 - GFF1855 0.11 -1.1 718,060 + GFF1855 0.29 -1.4 718,060 + GFF1855 0.29 -1.6 718,060 + GFF1855 0.29 -1.4 718,061 - GFF1855 0.29 -3.4 718,061 - GFF1855 0.29 -5.3 718,093 + GFF1855 0.31 -3.7 718,094 - GFF1855 0.31 -5.1 718,094 - GFF1855 0.31 -3.1 718,132 + GFF1855 0.33 -3.0 718,133 - GFF1855 0.33 -1.1 718,133 - GFF1855 0.33 -4.7 718,133 - GFF1855 0.33 -1.9 718,519 + GFF1855 0.53 -4.1 718,519 + GFF1855 0.53 -5.7 718,519 + GFF1855 0.53 -1.9 718,519 + GFF1855 0.53 -5.2 718,520 - GFF1855 0.53 -4.1 718,520 - GFF1855 0.53 -6.0 718,520 - GFF1855 0.53 -3.1 718,520 - GFF1855 0.53 -6.9 718,520 - GFF1855 0.53 -2.1 718,520 - GFF1855 0.53 -2.9 718,522 - GFF1855 0.53 -1.6 718,627 + GFF1855 0.59 -3.9 718,627 + GFF1855 0.59 -1.1 718,627 + GFF1855 0.59 -3.9 718,627 + GFF1855 0.59 -3.3 718,628 - GFF1855 0.59 -3.3 718,628 - GFF1855 0.59 -8.0 718,628 - GFF1855 0.59 -1.1 718,628 - GFF1855 0.59 -3.8 718,628 - GFF1855 0.59 -3.7 718,628 - GFF1855 0.59 -4.8 718,628 - GFF1855 0.59 -2.5 718,628 - GFF1855 0.59 -1.4 718,628 - GFF1855 0.59 -4.7 718,628 - GFF1855 0.59 -2.8 718,628 - GFF1855 0.59 -1.4 718,628 - GFF1855 0.59 -2.1 718,628 - GFF1855 0.59 -3.9 718,915 + GFF1855 0.74 -6.5 718,915 + GFF1855 0.74 -3.8 718,916 - GFF1855 0.74 -2.5 718,916 - GFF1855 0.74 -2.8 718,916 - GFF1855 0.74 -1.6 718,916 - GFF1855 0.74 -2.6 719,017 + GFF1855 0.80 -3.5 719,017 + GFF1855 0.80 -3.0 719,017 + GFF1855 0.80 -0.6 719,017 + GFF1855 0.80 -5.6 719,017 + GFF1855 0.80 -4.2 719,017 + GFF1855 0.80 -5.5 719,017 + GFF1855 0.80 -4.6 719,017 + GFF1855 0.80 -2.1 719,018 - GFF1855 0.80 -4.1 719,018 - GFF1855 0.80 -4.2 719,018 - GFF1855 0.80 -4.3 719,018 - GFF1855 0.80 -1.9 719,018 - GFF1855 0.80 -2.2 719,128 + GFF1855 0.86 -3.2 719,128 + GFF1855 0.86 -4.6 719,128 + GFF1855 0.86 -6.9 719,128 + GFF1855 0.86 -5.4 719,128 + GFF1855 0.86 -6.4 719,129 - GFF1855 0.86 -2.4 719,129 - GFF1855 0.86 -4.6 719,129 - GFF1855 0.86 -5.8 719,129 - GFF1855 0.86 -2.4 719,129 - GFF1855 0.86 -1.6 719,137 + GFF1855 0.86 -3.0 719,137 + GFF1855 0.86 -4.0 719,137 + GFF1855 0.86 -0.6 719,137 + GFF1855 0.86 -4.6 719,137 + GFF1855 0.86 -2.6 719,138 - GFF1855 0.86 -5.3 719,138 - GFF1855 0.86 -2.5 719,161 + GFF1855 0.87 -4.5 719,161 + GFF1855 0.87 -3.1 719,182 + GFF1855 0.88 -4.0 719,182 + GFF1855 0.88 -5.3 719,182 + GFF1855 0.88 -2.5 719,182 + GFF1855 0.88 -4.1 719,182 + GFF1855 0.88 -3.7 719,183 - GFF1855 0.88 -3.9 719,183 - GFF1855 0.88 -5.9 719,183 - GFF1855 0.88 -1.6 719,183 - GFF1855 0.88 -1.6 719,183 - GFF1855 0.88 -6.9 719,377 + -6.1 719,378 - -3.4 719,378 - -5.7 719,398 + -4.3 719,398 + -5.3 719,398 + -2.6 719,398 + -5.5 719,398 + -5.5 719,398 + -2.1 719,398 + -3.5 719,398 + -2.1 719,398 + -1.6 719,398 + -5.4 719,398 + -3.2 719,399 - -3.7 719,399 - -5.1 719,399 - -2.2 719,399 - -4.8 719,399 - -1.9 719,399 - -4.2 719,399 - -2.6 719,399 - -2.9 719,399 - -5.2 719,399 - -1.4 719,399 - -1.1 719,428 + -4.9 719,428 + -1.6 719,428 + -0.7 719,428 + -3.0 719,428 + +0.9 719,429 - -3.1 719,429 - -4.7 719,429 - -2.5 719,467 + -6.1 719,467 + -3.0 719,467 + -6.2 719,467 + -2.2 719,467 + -1.4 719,467 + -6.7 719,467 + -2.5 719,467 + -5.0 719,468 - -0.6 719,551 + -3.8 719,551 + -4.0 719,551 + -1.1 719,551 + -4.6 719,551 + -6.1 719,551 + -5.8 719,551 + -1.9 719,551 + -4.8 719,552 - -2.8 719,552 - -1.9 719,552 - -5.2 719,552 - -2.5 719,590 + GFF1856 0.12 -3.1 719,590 + GFF1856 0.12 -1.9 719,590 + GFF1856 0.12 -5.9 719,590 + GFF1856 0.12 -3.2 719,591 - GFF1856 0.12 -3.1 719,591 - GFF1856 0.12 -4.4 719,722 + GFF1856 0.21 -4.0 719,743 + GFF1856 0.22 -6.0 719,743 + GFF1856 0.22 -5.6 719,743 + GFF1856 0.22 -1.6 719,743 + GFF1856 0.22 -6.6 719,743 + GFF1856 0.22 -4.6 719,743 + GFF1856 0.22 -3.3 719,743 + GFF1856 0.22 -3.0 719,743 + GFF1856 0.22 -0.6 719,744 - GFF1856 0.23 -2.1 719,744 - GFF1856 0.23 -5.2 719,744 - GFF1856 0.23 -1.6 719,744 - GFF1856 0.23 -3.3 719,744 - GFF1856 0.23 -4.5 719,744 - GFF1856 0.23 -3.8 719,744 - GFF1856 0.23 -1.6 719,744 - GFF1856 0.23 -6.1 719,846 - GFF1856 0.29 -3.1 719,884 + GFF1856 0.32 -6.0 719,884 + GFF1856 0.32 -4.9 719,884 + GFF1856 0.32 -2.5 719,885 - GFF1856 0.32 -3.8 719,885 - GFF1856 0.32 -4.9 719,885 - GFF1856 0.32 -2.6 719,890 + GFF1856 0.32 -6.3 719,890 + GFF1856 0.32 -3.8 719,890 + GFF1856 0.32 -8.5 719,891 - GFF1856 0.32 -5.4 719,891 - GFF1856 0.32 -3.4 719,891 - GFF1856 0.32 -4.8 720,154 + GFF1856 0.49 -3.6 720,154 + GFF1856 0.49 -5.5 720,154 + GFF1856 0.49 -4.7 720,154 + GFF1856 0.49 -2.6 720,154 + GFF1856 0.49 -3.3 720,154 + GFF1856 0.49 -3.1 720,154 + GFF1856 0.49 -1.6 720,154 + GFF1856 0.49 -3.0 720,154 + GFF1856 0.49 -0.6 720,155 - GFF1856 0.49 -3.1 720,155 - GFF1856 0.49 -5.7 720,155 - GFF1856 0.49 -1.6 720,155 - GFF1856 0.49 -3.0 720,155 - GFF1856 0.49 -2.5 720,155 - GFF1856 0.49 -2.1 720,155 - GFF1856 0.49 -4.3 720,182 - GFF1856 0.51 -4.0 720,397 + GFF1856 0.65 -6.4 720,397 + GFF1856 0.65 -3.4 720,397 + GFF1856 0.65 -3.9 720,398 - GFF1856 0.65 -1.8 720,398 - GFF1856 0.65 -3.7 720,398 - GFF1856 0.65 -1.6 720,398 - GFF1856 0.65 -2.2 720,398 - GFF1856 0.65 -1.1 720,398 - GFF1856 0.65 -4.0
Or see this region's nucleotide sequence