Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1852 and GFF1853 are separated by 206 nucleotides GFF1853 and GFF1854 are separated by 92 nucleotides GFF1854 and GFF1855 are separated by 20 nucleotides
GFF1852 - hypothetical protein, at 714,295 to 715,638
GFF1852
GFF1853 - N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43), at 715,845 to 716,537
GFF1853
GFF1854 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 716,630 to 717,496
GFF1854
GFF1855 - N-acetylneuraminate synthase (EC 2.5.1.56), at 717,517 to 719,400
GFF1855
Position (kb) 716
717
718 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 715.736 kb on + strand at 715.736 kb on + strand at 715.736 kb on + strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.737 kb on - strand at 715.778 kb on + strand at 715.778 kb on + strand at 715.778 kb on + strand at 715.778 kb on + strand at 715.778 kb on + strand at 715.778 kb on + strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.779 kb on - strand at 715.800 kb on + strand at 715.800 kb on + strand at 715.800 kb on + strand at 715.800 kb on + strand at 715.801 kb on - strand at 715.801 kb on - strand at 716.142 kb on + strand, within GFF1853 at 716.143 kb on - strand, within GFF1853 at 716.316 kb on + strand, within GFF1853 at 716.316 kb on + strand, within GFF1853 at 716.316 kb on + strand, within GFF1853 at 716.317 kb on - strand, within GFF1853 at 716.317 kb on - strand, within GFF1853 at 716.361 kb on + strand, within GFF1853 at 716.361 kb on + strand, within GFF1853 at 716.361 kb on + strand, within GFF1853 at 716.361 kb on + strand, within GFF1853 at 716.361 kb on + strand, within GFF1853 at 716.362 kb on - strand, within GFF1853 at 716.362 kb on - strand, within GFF1853 at 716.362 kb on - strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.382 kb on + strand, within GFF1853 at 716.383 kb on - strand, within GFF1853 at 716.383 kb on - strand, within GFF1853 at 716.383 kb on - strand, within GFF1853 at 716.383 kb on - strand, within GFF1853 at 716.642 kb on + strand at 716.643 kb on - strand at 716.643 kb on - strand at 716.909 kb on + strand, within GFF1854 at 716.910 kb on - strand, within GFF1854 at 717.043 kb on + strand, within GFF1854 at 717.172 kb on + strand, within GFF1854 at 717.172 kb on + strand, within GFF1854 at 717.222 kb on - strand, within GFF1854 at 717.222 kb on - strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.260 kb on + strand, within GFF1854 at 717.322 kb on + strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.323 kb on - strand, within GFF1854 at 717.439 kb on + strand at 717.440 kb on - strand at 717.440 kb on - strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.479 kb on + strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.480 kb on - strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.553 kb on + strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.554 kb on - strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.679 kb on + strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.680 kb on - strand at 717.730 kb on + strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 717.731 kb on - strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.060 kb on + strand, within GFF1855 at 718.061 kb on - strand, within GFF1855 at 718.061 kb on - strand, within GFF1855 at 718.093 kb on + strand, within GFF1855 at 718.094 kb on - strand, within GFF1855 at 718.094 kb on - strand, within GFF1855 at 718.132 kb on + strand, within GFF1855 at 718.133 kb on - strand, within GFF1855 at 718.133 kb on - strand, within GFF1855 at 718.133 kb on - strand, within GFF1855
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 715,736 + +0.5 715,736 + -0.6 715,736 + -0.3 715,737 - -0.9 715,737 - +0.4 715,737 - -0.0 715,737 - -0.1 715,737 - +0.7 715,737 - -0.1 715,737 - -0.1 715,778 + -0.2 715,778 + +0.1 715,778 + +0.1 715,778 + +1.4 715,778 + -0.1 715,778 + +0.1 715,779 - +0.9 715,779 - -0.3 715,779 - +0.1 715,779 - -0.4 715,779 - -0.4 715,779 - +1.3 715,779 - -0.1 715,779 - -0.1 715,779 - +0.6 715,779 - +0.5 715,779 - +0.3 715,779 - -0.5 715,800 + +0.1 715,800 + +0.3 715,800 + +0.5 715,800 + +0.6 715,801 - +0.5 715,801 - -0.3 716,142 + GFF1853 0.43 -6.0 716,143 - GFF1853 0.43 -3.1 716,316 + GFF1853 0.68 -0.6 716,316 + GFF1853 0.68 -2.5 716,316 + GFF1853 0.68 -0.1 716,317 - GFF1853 0.68 -4.5 716,317 - GFF1853 0.68 -1.6 716,361 + GFF1853 0.74 -2.2 716,361 + GFF1853 0.74 -5.6 716,361 + GFF1853 0.74 -4.4 716,361 + GFF1853 0.74 -7.0 716,361 + GFF1853 0.74 -2.7 716,362 - GFF1853 0.75 -6.0 716,362 - GFF1853 0.75 -3.8 716,362 - GFF1853 0.75 -3.5 716,382 + GFF1853 0.77 -5.6 716,382 + GFF1853 0.77 -5.1 716,382 + GFF1853 0.77 -4.9 716,382 + GFF1853 0.77 -5.7 716,382 + GFF1853 0.77 -5.0 716,382 + GFF1853 0.77 -1.4 716,382 + GFF1853 0.77 -4.8 716,382 + GFF1853 0.77 -1.1 716,382 + GFF1853 0.77 -6.1 716,382 + GFF1853 0.77 -1.9 716,382 + GFF1853 0.77 -2.4 716,383 - GFF1853 0.78 -5.3 716,383 - GFF1853 0.78 -2.8 716,383 - GFF1853 0.78 -7.3 716,383 - GFF1853 0.78 -3.1 716,642 + -4.0 716,643 - -1.2 716,643 - -5.6 716,909 + GFF1854 0.32 -2.1 716,910 - GFF1854 0.32 -1.4 717,043 + GFF1854 0.48 -3.4 717,172 + GFF1854 0.63 -3.7 717,172 + GFF1854 0.63 -4.3 717,222 - GFF1854 0.68 -3.8 717,222 - GFF1854 0.68 -5.2 717,260 + GFF1854 0.73 -5.0 717,260 + GFF1854 0.73 -1.4 717,260 + GFF1854 0.73 -4.3 717,260 + GFF1854 0.73 -3.2 717,260 + GFF1854 0.73 -2.2 717,260 + GFF1854 0.73 -3.8 717,322 + GFF1854 0.80 -5.3 717,323 - GFF1854 0.80 -4.6 717,323 - GFF1854 0.80 -3.6 717,323 - GFF1854 0.80 -2.6 717,323 - GFF1854 0.80 -3.1 717,323 - GFF1854 0.80 -3.5 717,439 + -3.7 717,440 - -4.7 717,440 - -3.7 717,479 + -6.5 717,479 + -2.9 717,479 + -3.5 717,479 + -2.5 717,480 - -3.0 717,480 - -6.2 717,480 - -2.5 717,480 - -2.9 717,553 + -3.8 717,553 + -3.3 717,553 + -0.6 717,553 + -4.3 717,553 + -4.6 717,553 + -1.1 717,553 + -3.9 717,553 + -2.4 717,553 + -4.2 717,554 - -4.8 717,554 - -5.7 717,554 - -1.6 717,554 - -4.9 717,554 - -2.8 717,554 - -3.6 717,554 - -2.6 717,554 - -2.2 717,554 - -5.6 717,679 + -2.6 717,679 + -3.2 717,679 + -3.4 717,679 + -6.4 717,679 + -3.0 717,679 + -3.0 717,679 + -5.3 717,679 + -5.3 717,679 + -6.2 717,679 + -0.6 717,679 + -3.6 717,679 + -4.6 717,679 + -4.2 717,680 - -1.9 717,680 - -6.6 717,680 - -1.6 717,680 - -1.4 717,680 - -5.7 717,680 - -6.3 717,680 - -4.2 717,680 - -3.3 717,730 + GFF1855 0.11 -4.8 717,731 - GFF1855 0.11 -2.9 717,731 - GFF1855 0.11 -2.8 717,731 - GFF1855 0.11 -1.1 718,060 + GFF1855 0.29 -1.4 718,060 + GFF1855 0.29 -1.6 718,060 + GFF1855 0.29 -1.4 718,061 - GFF1855 0.29 -3.4 718,061 - GFF1855 0.29 -5.3 718,093 + GFF1855 0.31 -3.7 718,094 - GFF1855 0.31 -5.1 718,094 - GFF1855 0.31 -3.1 718,132 + GFF1855 0.33 -3.0 718,133 - GFF1855 0.33 -1.1 718,133 - GFF1855 0.33 -4.7 718,133 - GFF1855 0.33 -1.9
Or see this region's nucleotide sequence