Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1767

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1766 and GFF1767 are separated by 223 nucleotidesGFF1767 and GFF1768 are separated by 51 nucleotidesGFF1768 and GFF1769 are separated by 71 nucleotides GFF1766 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 629,573 to 630,793 GFF1766 GFF1767 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 631,017 to 633,233 GFF1767 GFF1768 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 633,285 to 633,911 GFF1768 GFF1769 - Uroporphyrinogen III decarboxylase (EC 4.1.1.37), at 633,983 to 635,086 GFF1769 Position (kb) 631 632 633 634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 630.099 kb on + strand, within GFF1766at 630.099 kb on + strand, within GFF1766at 630.100 kb on - strand, within GFF1766at 630.370 kb on - strand, within GFF1766at 630.370 kb on - strand, within GFF1766at 630.370 kb on - strand, within GFF1766at 630.370 kb on - strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.399 kb on + strand, within GFF1766at 630.400 kb on - strand, within GFF1766at 630.400 kb on - strand, within GFF1766at 630.420 kb on + strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.421 kb on - strand, within GFF1766at 630.427 kb on - strand, within GFF1766at 630.427 kb on - strand, within GFF1766at 630.427 kb on - strand, within GFF1766at 630.530 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.582 kb on + strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.583 kb on - strand, within GFF1766at 630.840 kb on + strandat 630.841 kb on - strandat 630.921 kb on + strandat 630.921 kb on + strandat 630.923 kb on + strandat 630.923 kb on + strandat 630.923 kb on + strandat 630.924 kb on - strandat 630.924 kb on - strandat 630.969 kb on + strandat 630.969 kb on + strandat 630.970 kb on - strandat 630.970 kb on - strandat 631.260 kb on + strand, within GFF1767at 631.260 kb on + strand, within GFF1767at 631.386 kb on + strand, within GFF1767at 631.387 kb on - strand, within GFF1767at 631.387 kb on - strand, within GFF1767at 631.471 kb on - strand, within GFF1767at 632.170 kb on - strand, within GFF1767at 633.231 kb on + strandat 633.231 kb on + strandat 633.232 kb on - strandat 633.498 kb on + strand, within GFF1768at 633.498 kb on + strand, within GFF1768at 633.498 kb on + strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.499 kb on - strand, within GFF1768at 633.591 kb on + strand, within GFF1768at 633.592 kb on - strand, within GFF1768at 633.592 kb on - strand, within GFF1768at 633.688 kb on - strand, within GFF1768at 633.688 kb on - strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.714 kb on + strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.715 kb on - strand, within GFF1768at 633.744 kb on + strand, within GFF1768at 633.744 kb on + strand, within GFF1768at 633.744 kb on + strand, within GFF1768at 633.745 kb on - strand, within GFF1768at 633.745 kb on - strand, within GFF1768at 633.745 kb on - strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.807 kb on + strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.808 kb on - strand, within GFF1768at 633.891 kb on + strandat 633.891 kb on + strandat 633.891 kb on + strandat 633.891 kb on + strandat 633.892 kb on - strandat 633.892 kb on - strandat 633.892 kb on - strandat 633.892 kb on - strandat 633.892 kb on - strandat 633.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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630,099 + GFF1766 0.43 +0.1
630,099 + GFF1766 0.43 -0.1
630,100 - GFF1766 0.43 -0.8
630,370 - GFF1766 0.65 -1.4
630,370 - GFF1766 0.65 +0.3
630,370 - GFF1766 0.65 -0.5
630,370 - GFF1766 0.65 -1.3
630,399 + GFF1766 0.68 -0.2
630,399 + GFF1766 0.68 -0.2
630,399 + GFF1766 0.68 -0.4
630,399 + GFF1766 0.68 -0.2
630,399 + GFF1766 0.68 +0.5
630,399 + GFF1766 0.68 +0.4
630,399 + GFF1766 0.68 +0.1
630,399 + GFF1766 0.68 +0.6
630,399 + GFF1766 0.68 -0.3
630,400 - GFF1766 0.68 +0.4
630,400 - GFF1766 0.68 +0.4
630,420 + GFF1766 0.69 +0.1
630,421 - GFF1766 0.69 +0.1
630,421 - GFF1766 0.69 -0.3
630,421 - GFF1766 0.69 +0.9
630,421 - GFF1766 0.69 -0.4
630,421 - GFF1766 0.69 +0.2
630,421 - GFF1766 0.69 -0.3
630,421 - GFF1766 0.69 +0.0
630,421 - GFF1766 0.69 -0.3
630,427 - GFF1766 0.70 +0.3
630,427 - GFF1766 0.70 +1.2
630,427 - GFF1766 0.70 +1.9
630,530 + GFF1766 0.78 -0.0
630,582 + GFF1766 0.83 -0.2
630,582 + GFF1766 0.83 +1.4
630,582 + GFF1766 0.83 +1.4
630,582 + GFF1766 0.83 -0.4
630,582 + GFF1766 0.83 -0.3
630,582 + GFF1766 0.83 -1.6
630,582 + GFF1766 0.83 +0.3
630,582 + GFF1766 0.83 +0.9
630,582 + GFF1766 0.83 -0.2
630,583 - GFF1766 0.83 +0.4
630,583 - GFF1766 0.83 -0.3
630,583 - GFF1766 0.83 -0.2
630,583 - GFF1766 0.83 -0.3
630,583 - GFF1766 0.83 -0.3
630,583 - GFF1766 0.83 +0.4
630,840 + -0.4
630,841 - +0.9
630,921 + +0.4
630,921 + +0.0
630,923 + -0.8
630,923 + -0.3
630,923 + -0.1
630,924 - -0.2
630,924 - +0.4
630,969 + -0.1
630,969 + +0.2
630,970 - +0.4
630,970 - +0.2
631,260 + GFF1767 0.11 -3.1
631,260 + GFF1767 0.11 -2.4
631,386 + GFF1767 0.17 -0.1
631,387 - GFF1767 0.17 -2.6
631,387 - GFF1767 0.17 +0.9
631,471 - GFF1767 0.20 -1.4
632,170 - GFF1767 0.52 -0.6
633,231 + -1.1
633,231 + +0.4
633,232 - -0.1
633,498 + GFF1768 0.34 +0.2
633,498 + GFF1768 0.34 +1.0
633,498 + GFF1768 0.34 -0.2
633,499 - GFF1768 0.34 +0.4
633,499 - GFF1768 0.34 +0.4
633,499 - GFF1768 0.34 -0.4
633,499 - GFF1768 0.34 +0.6
633,499 - GFF1768 0.34 -0.2
633,499 - GFF1768 0.34 -1.1
633,591 + GFF1768 0.49 +0.8
633,592 - GFF1768 0.49 -0.2
633,592 - GFF1768 0.49 +1.3
633,688 - GFF1768 0.64 -0.1
633,688 - GFF1768 0.64 +0.2
633,714 + GFF1768 0.68 -0.6
633,714 + GFF1768 0.68 +0.5
633,714 + GFF1768 0.68 +0.1
633,714 + GFF1768 0.68 +0.4
633,714 + GFF1768 0.68 +1.5
633,714 + GFF1768 0.68 -0.8
633,714 + GFF1768 0.68 +0.3
633,714 + GFF1768 0.68 +0.2
633,714 + GFF1768 0.68 -0.1
633,714 + GFF1768 0.68 -0.4
633,714 + GFF1768 0.68 +0.5
633,714 + GFF1768 0.68 +1.0
633,714 + GFF1768 0.68 +0.4
633,714 + GFF1768 0.68 +0.6
633,714 + GFF1768 0.68 -0.2
633,714 + GFF1768 0.68 +0.3
633,714 + GFF1768 0.68 +0.6
633,714 + GFF1768 0.68 -0.2
633,714 + GFF1768 0.68 +1.2
633,714 + GFF1768 0.68 +0.6
633,714 + GFF1768 0.68 -0.1
633,714 + GFF1768 0.68 +0.2
633,715 - GFF1768 0.69 -0.2
633,715 - GFF1768 0.69 -0.1
633,715 - GFF1768 0.69 +0.6
633,715 - GFF1768 0.69 -1.9
633,715 - GFF1768 0.69 +1.1
633,715 - GFF1768 0.69 +0.1
633,715 - GFF1768 0.69 -0.2
633,715 - GFF1768 0.69 -0.5
633,715 - GFF1768 0.69 -0.4
633,715 - GFF1768 0.69 -0.5
633,715 - GFF1768 0.69 +0.0
633,715 - GFF1768 0.69 -1.4
633,715 - GFF1768 0.69 +0.4
633,715 - GFF1768 0.69 -0.5
633,715 - GFF1768 0.69 +1.1
633,715 - GFF1768 0.69 -0.1
633,715 - GFF1768 0.69 +0.3
633,715 - GFF1768 0.69 -0.5
633,715 - GFF1768 0.69 +1.5
633,715 - GFF1768 0.69 -0.5
633,744 + GFF1768 0.73 +1.7
633,744 + GFF1768 0.73 +0.4
633,744 + GFF1768 0.73 -0.2
633,745 - GFF1768 0.73 +0.2
633,745 - GFF1768 0.73 -1.4
633,745 - GFF1768 0.73 -0.9
633,807 + GFF1768 0.83 +0.2
633,807 + GFF1768 0.83 +0.1
633,807 + GFF1768 0.83 -0.2
633,807 + GFF1768 0.83 -0.1
633,807 + GFF1768 0.83 -0.1
633,807 + GFF1768 0.83 +0.9
633,807 + GFF1768 0.83 -0.5
633,807 + GFF1768 0.83 -0.1
633,807 + GFF1768 0.83 -0.4
633,808 - GFF1768 0.83 +0.2
633,808 - GFF1768 0.83 -0.1
633,808 - GFF1768 0.83 -0.5
633,808 - GFF1768 0.83 -1.4
633,808 - GFF1768 0.83 +0.4
633,808 - GFF1768 0.83 -0.6
633,808 - GFF1768 0.83 +0.2
633,808 - GFF1768 0.83 -0.1
633,808 - GFF1768 0.83 +0.3
633,891 + +0.5
633,891 + -0.1
633,891 + +0.4
633,891 + +0.2
633,892 - -0.3
633,892 - +0.4
633,892 - -0.6
633,892 - +0.4
633,892 - -0.1
633,909 + -0.1

Or see this region's nucleotide sequence