Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1760

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1758 and GFF1759 are separated by 149 nucleotidesGFF1759 and GFF1760 are separated by 34 nucleotidesGFF1760 and GFF1761 are separated by 120 nucleotides GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346 GFF1758 GFF1759 - Tricarboxylate transport protein TctB, at 622,496 to 622,981 GFF1759 GFF1760 - Tricarboxylate transport membrane protein TctA, at 623,016 to 624,527 GFF1760 GFF1761 - Related to two-component system sensory/regulatory protein, at 624,648 to 626,972 GFF1761 Position (kb) 623 624 625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.072 kb on - strand, within GFF1758at 622.416 kb on + strandat 622.417 kb on - strandat 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.616 kb on + strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.760 kb on - strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.233 kb on - strand, within GFF1760at 623.307 kb on + strand, within GFF1760at 623.454 kb on + strand, within GFF1760at 623.454 kb on + strand, within GFF1760at 623.455 kb on - strand, within GFF1760at 623.455 kb on - strand, within GFF1760at 623.592 kb on + strand, within GFF1760at 623.592 kb on + strand, within GFF1760at 623.662 kb on - strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.854 kb on - strand, within GFF1760at 623.854 kb on - strand, within GFF1760at 623.854 kb on - strand, within GFF1760at 624.186 kb on + strand, within GFF1760at 624.187 kb on - strand, within GFF1760at 624.187 kb on - strand, within GFF1760at 624.187 kb on - strand, within GFF1760at 624.187 kb on - strand, within GFF1760at 624.187 kb on - strand, within GFF1760at 624.234 kb on + strand, within GFF1760at 624.235 kb on - strand, within GFF1760at 624.235 kb on - strand, within GFF1760at 624.235 kb on - strand, within GFF1760at 624.294 kb on + strand, within GFF1760at 624.294 kb on + strand, within GFF1760at 624.369 kb on + strand, within GFF1760at 624.369 kb on + strand, within GFF1760at 624.369 kb on + strand, within GFF1760at 624.369 kb on + strand, within GFF1760at 624.369 kb on + strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.370 kb on - strand, within GFF1760at 624.517 kb on + strandat 624.517 kb on + strandat 624.517 kb on + strandat 624.518 kb on - strandat 624.518 kb on - strandat 624.518 kb on - strandat 624.518 kb on - strandat 624.518 kb on - strandat 624.766 kb on + strandat 624.767 kb on - strandat 624.767 kb on - strandat 624.853 kb on + strandat 624.854 kb on - strandat 624.941 kb on - strand, within GFF1761at 625.000 kb on + strand, within GFF1761at 625.001 kb on - strand, within GFF1761at 625.055 kb on + strand, within GFF1761at 625.056 kb on - strand, within GFF1761at 625.056 kb on - strand, within GFF1761at 625.056 kb on - strand, within GFF1761at 625.174 kb on + strand, within GFF1761at 625.174 kb on + strand, within GFF1761at 625.174 kb on + strand, within GFF1761at 625.175 kb on - strand, within GFF1761

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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622,071 + GFF1758 0.80 -0.6
622,071 + GFF1758 0.80 -1.0
622,071 + GFF1758 0.80 -1.5
622,071 + GFF1758 0.80 -1.1
622,072 - GFF1758 0.80 -1.2
622,416 + +0.8
622,417 - +0.0
622,580 + GFF1759 0.17 -1.4
622,580 + GFF1759 0.17 -1.1
622,580 + GFF1759 0.17 -0.7
622,580 + GFF1759 0.17 -1.1
622,580 + GFF1759 0.17 -1.0
622,580 + GFF1759 0.17 -1.4
622,581 - GFF1759 0.17 -1.7
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -0.6
622,581 - GFF1759 0.17 -1.4
622,581 - GFF1759 0.17 -1.1
622,616 + GFF1759 0.25 -0.3
622,617 - GFF1759 0.25 -0.6
622,617 - GFF1759 0.25 -0.8
622,760 - GFF1759 0.54 -1.2
622,829 + GFF1759 0.69 +0.4
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.6
622,829 + GFF1759 0.69 -0.2
622,829 + GFF1759 0.69 -1.3
622,829 + GFF1759 0.69 -1.1
622,829 + GFF1759 0.69 -0.7
622,829 + GFF1759 0.69 -1.2
622,830 - GFF1759 0.69 -0.9
622,830 - GFF1759 0.69 +0.0
622,919 + GFF1759 0.87 -0.3
622,919 + GFF1759 0.87 -1.1
622,919 + GFF1759 0.87 -0.4
622,919 + GFF1759 0.87 -1.1
622,919 + GFF1759 0.87 -1.3
622,919 + GFF1759 0.87 -1.2
622,919 + GFF1759 0.87 +0.5
622,919 + GFF1759 0.87 -1.2
622,919 + GFF1759 0.87 -1.2
622,920 - GFF1759 0.87 -1.0
622,920 - GFF1759 0.87 -1.6
622,920 - GFF1759 0.87 -1.5
622,920 - GFF1759 0.87 -2.7
622,920 - GFF1759 0.87 -0.9
622,920 - GFF1759 0.87 -2.4
622,920 - GFF1759 0.87 -0.4
622,920 - GFF1759 0.87 -1.1
623,079 + -1.0
623,079 + -1.9
623,079 + -0.6
623,079 + -1.0
623,079 + -0.5
623,079 + -0.8
623,079 + -1.4
623,080 - -2.0
623,080 - -1.3
623,080 - -0.9
623,080 - -1.6
623,080 - -1.5
623,080 - +1.9
623,172 + GFF1760 0.10 -1.4
623,172 + GFF1760 0.10 -0.9
623,172 + GFF1760 0.10 -1.9
623,173 - GFF1760 0.10 -0.6
623,173 - GFF1760 0.10 -1.6
623,173 - GFF1760 0.10 -1.2
623,217 + GFF1760 0.13 -1.0
623,217 + GFF1760 0.13 -0.6
623,217 + GFF1760 0.13 -0.9
623,217 + GFF1760 0.13 -2.1
623,217 + GFF1760 0.13 -2.3
623,217 + GFF1760 0.13 -1.1
623,217 + GFF1760 0.13 -1.5
623,218 - GFF1760 0.13 -0.1
623,218 - GFF1760 0.13 -0.1
623,218 - GFF1760 0.13 -1.5
623,218 - GFF1760 0.13 -1.4
623,218 - GFF1760 0.13 -1.0
623,220 + GFF1760 0.13 -0.9
623,220 + GFF1760 0.13 -1.8
623,220 + GFF1760 0.13 -1.6
623,221 - GFF1760 0.14 -1.2
623,221 - GFF1760 0.14 -0.8
623,221 - GFF1760 0.14 -1.4
623,232 + GFF1760 0.14 -1.5
623,232 + GFF1760 0.14 -1.7
623,232 + GFF1760 0.14 -1.7
623,233 - GFF1760 0.14 -1.6
623,307 + GFF1760 0.19 -1.6
623,454 + GFF1760 0.29 -2.5
623,454 + GFF1760 0.29 -0.9
623,455 - GFF1760 0.29 -0.7
623,455 - GFF1760 0.29 -0.7
623,592 + GFF1760 0.38 -3.3
623,592 + GFF1760 0.38 -1.7
623,662 - GFF1760 0.43 -1.4
623,853 + GFF1760 0.55 -0.2
623,853 + GFF1760 0.55 -2.5
623,853 + GFF1760 0.55 -0.9
623,854 - GFF1760 0.55 -1.2
623,854 - GFF1760 0.55 -1.5
623,854 - GFF1760 0.55 -0.5
624,186 + GFF1760 0.77 -2.0
624,187 - GFF1760 0.77 -0.9
624,187 - GFF1760 0.77 -1.4
624,187 - GFF1760 0.77 -1.6
624,187 - GFF1760 0.77 -1.6
624,187 - GFF1760 0.77 -2.1
624,234 + GFF1760 0.81 -4.1
624,235 - GFF1760 0.81 -0.1
624,235 - GFF1760 0.81 -1.3
624,235 - GFF1760 0.81 -3.0
624,294 + GFF1760 0.85 -1.9
624,294 + GFF1760 0.85 -3.7
624,369 + GFF1760 0.89 -2.2
624,369 + GFF1760 0.89 -1.4
624,369 + GFF1760 0.89 -1.6
624,369 + GFF1760 0.89 -0.8
624,369 + GFF1760 0.89 -1.3
624,370 - GFF1760 0.90 -2.5
624,370 - GFF1760 0.90 -1.7
624,370 - GFF1760 0.90 +0.4
624,370 - GFF1760 0.90 -1.3
624,370 - GFF1760 0.90 -1.6
624,370 - GFF1760 0.90 -2.4
624,517 + -0.2
624,517 + -0.5
624,517 + -0.3
624,518 - -1.2
624,518 - -0.3
624,518 - -1.2
624,518 - +0.4
624,518 - -1.6
624,766 + -0.2
624,767 - +0.9
624,767 - +0.1
624,853 + +0.3
624,854 - +0.1
624,941 - GFF1761 0.13 +0.4
625,000 + GFF1761 0.15 -0.2
625,001 - GFF1761 0.15 +0.9
625,055 + GFF1761 0.18 +1.1
625,056 - GFF1761 0.18 +0.1
625,056 - GFF1761 0.18 +1.6
625,056 - GFF1761 0.18 -0.3
625,174 + GFF1761 0.23 -0.5
625,174 + GFF1761 0.23 -0.1
625,174 + GFF1761 0.23 +0.4
625,175 - GFF1761 0.23 -0.3

Or see this region's nucleotide sequence