Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1758

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1756 and GFF1757 are separated by 86 nucleotidesGFF1757 and GFF1758 overlap by 4 nucleotidesGFF1758 and GFF1759 are separated by 149 nucleotidesGFF1759 and GFF1760 are separated by 34 nucleotides GFF1756 - Threonine dehydratase (EC 4.3.1.19), at 619,214 to 620,182 GFF1756 GFF1757 - response regulator in two-component regulatory system with PhoQ, at 620,269 to 620,976 GFF1757 GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346 GFF1758 GFF1759 - Tricarboxylate transport protein TctB, at 622,496 to 622,981 GFF1759 GFF1760 - Tricarboxylate transport membrane protein TctA, at 623,016 to 624,527 GFF1760 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -2 -1 0 1 2at 620.329 kb on + strandat 620.329 kb on + strandat 620.329 kb on + strandat 620.329 kb on + strandat 620.330 kb on - strandat 620.331 kb on + strandat 620.331 kb on + strandat 620.332 kb on - strandat 620.332 kb on - strandat 620.581 kb on + strand, within GFF1757at 620.581 kb on + strand, within GFF1757at 620.581 kb on + strand, within GFF1757at 620.582 kb on - strand, within GFF1757at 620.582 kb on - strand, within GFF1757at 620.770 kb on + strand, within GFF1757at 620.770 kb on + strand, within GFF1757at 620.771 kb on - strand, within GFF1757at 620.771 kb on - strand, within GFF1757at 620.833 kb on + strand, within GFF1757at 620.834 kb on - strand, within GFF1757at 620.834 kb on - strand, within GFF1757at 620.834 kb on - strand, within GFF1757at 621.027 kb on + strandat 621.028 kb on - strandat 621.028 kb on - strandat 621.028 kb on - strandat 621.028 kb on - strandat 621.030 kb on + strandat 621.031 kb on - strandat 621.078 kb on + strandat 621.078 kb on + strandat 621.079 kb on - strandat 621.079 kb on - strandat 621.079 kb on - strandat 621.237 kb on + strand, within GFF1758at 621.237 kb on + strand, within GFF1758at 621.238 kb on - strand, within GFF1758at 621.360 kb on + strand, within GFF1758at 621.360 kb on + strand, within GFF1758at 621.360 kb on + strand, within GFF1758at 621.360 kb on + strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.361 kb on - strand, within GFF1758at 621.824 kb on - strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.072 kb on - strand, within GFF1758at 622.416 kb on + strandat 622.417 kb on - strandat 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.616 kb on + strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.760 kb on - strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.233 kb on - strand, within GFF1760at 623.307 kb on + strand, within GFF1760

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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620,329 + -1.2
620,329 + -1.1
620,329 + -1.4
620,329 + -0.2
620,330 - +0.2
620,331 + -2.0
620,331 + -1.4
620,332 - -0.6
620,332 - -0.6
620,581 + GFF1757 0.44 -0.9
620,581 + GFF1757 0.44 -0.4
620,581 + GFF1757 0.44 -1.0
620,582 - GFF1757 0.44 -1.0
620,582 - GFF1757 0.44 -1.1
620,770 + GFF1757 0.71 -1.0
620,770 + GFF1757 0.71 -1.6
620,771 - GFF1757 0.71 +0.6
620,771 - GFF1757 0.71 -1.4
620,833 + GFF1757 0.80 -0.9
620,834 - GFF1757 0.80 -1.2
620,834 - GFF1757 0.80 -0.9
620,834 - GFF1757 0.80 -1.5
621,027 + -1.1
621,028 - -1.5
621,028 - +0.1
621,028 - -1.6
621,028 - +0.5
621,030 + -0.5
621,031 - -0.8
621,078 + -1.0
621,078 + -0.7
621,079 - -1.1
621,079 - -1.5
621,079 - -0.2
621,237 + GFF1758 0.19 -1.1
621,237 + GFF1758 0.19 -1.6
621,238 - GFF1758 0.19 -0.9
621,360 + GFF1758 0.28 -0.9
621,360 + GFF1758 0.28 -1.4
621,360 + GFF1758 0.28 -1.3
621,360 + GFF1758 0.28 -1.2
621,361 - GFF1758 0.28 -1.5
621,361 - GFF1758 0.28 -2.2
621,361 - GFF1758 0.28 -1.2
621,361 - GFF1758 0.28 -0.2
621,361 - GFF1758 0.28 -0.1
621,361 - GFF1758 0.28 -2.0
621,824 - GFF1758 0.62 -1.3
622,071 + GFF1758 0.80 -0.6
622,071 + GFF1758 0.80 -1.0
622,071 + GFF1758 0.80 -1.5
622,071 + GFF1758 0.80 -1.1
622,072 - GFF1758 0.80 -1.2
622,416 + +0.8
622,417 - +0.0
622,580 + GFF1759 0.17 -1.4
622,580 + GFF1759 0.17 -1.1
622,580 + GFF1759 0.17 -0.7
622,580 + GFF1759 0.17 -1.1
622,580 + GFF1759 0.17 -1.0
622,580 + GFF1759 0.17 -1.4
622,581 - GFF1759 0.17 -1.7
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -1.3
622,581 - GFF1759 0.17 -0.6
622,581 - GFF1759 0.17 -1.4
622,581 - GFF1759 0.17 -1.1
622,616 + GFF1759 0.25 -0.3
622,617 - GFF1759 0.25 -0.6
622,617 - GFF1759 0.25 -0.8
622,760 - GFF1759 0.54 -1.2
622,829 + GFF1759 0.69 +0.4
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.2
622,829 + GFF1759 0.69 -1.6
622,829 + GFF1759 0.69 -0.2
622,829 + GFF1759 0.69 -1.3
622,829 + GFF1759 0.69 -1.1
622,829 + GFF1759 0.69 -0.7
622,829 + GFF1759 0.69 -1.2
622,830 - GFF1759 0.69 -0.9
622,830 - GFF1759 0.69 +0.0
622,919 + GFF1759 0.87 -0.3
622,919 + GFF1759 0.87 -1.1
622,919 + GFF1759 0.87 -0.4
622,919 + GFF1759 0.87 -1.1
622,919 + GFF1759 0.87 -1.3
622,919 + GFF1759 0.87 -1.2
622,919 + GFF1759 0.87 +0.5
622,919 + GFF1759 0.87 -1.2
622,919 + GFF1759 0.87 -1.2
622,920 - GFF1759 0.87 -1.0
622,920 - GFF1759 0.87 -1.6
622,920 - GFF1759 0.87 -1.5
622,920 - GFF1759 0.87 -2.7
622,920 - GFF1759 0.87 -0.9
622,920 - GFF1759 0.87 -2.4
622,920 - GFF1759 0.87 -0.4
622,920 - GFF1759 0.87 -1.1
623,079 + -1.0
623,079 + -1.9
623,079 + -0.6
623,079 + -1.0
623,079 + -0.5
623,079 + -0.8
623,079 + -1.4
623,080 - -2.0
623,080 - -1.3
623,080 - -0.9
623,080 - -1.6
623,080 - -1.5
623,080 - +1.9
623,172 + GFF1760 0.10 -1.4
623,172 + GFF1760 0.10 -0.9
623,172 + GFF1760 0.10 -1.9
623,173 - GFF1760 0.10 -0.6
623,173 - GFF1760 0.10 -1.6
623,173 - GFF1760 0.10 -1.2
623,217 + GFF1760 0.13 -1.0
623,217 + GFF1760 0.13 -0.6
623,217 + GFF1760 0.13 -0.9
623,217 + GFF1760 0.13 -2.1
623,217 + GFF1760 0.13 -2.3
623,217 + GFF1760 0.13 -1.1
623,217 + GFF1760 0.13 -1.5
623,218 - GFF1760 0.13 -0.1
623,218 - GFF1760 0.13 -0.1
623,218 - GFF1760 0.13 -1.5
623,218 - GFF1760 0.13 -1.4
623,218 - GFF1760 0.13 -1.0
623,220 + GFF1760 0.13 -0.9
623,220 + GFF1760 0.13 -1.8
623,220 + GFF1760 0.13 -1.6
623,221 - GFF1760 0.14 -1.2
623,221 - GFF1760 0.14 -0.8
623,221 - GFF1760 0.14 -1.4
623,232 + GFF1760 0.14 -1.5
623,232 + GFF1760 0.14 -1.7
623,232 + GFF1760 0.14 -1.7
623,233 - GFF1760 0.14 -1.6
623,307 + GFF1760 0.19 -1.6

Or see this region's nucleotide sequence