Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1417 and GFF1418 are separated by 77 nucleotides GFF1418 and GFF1419 are separated by 178 nucleotides GFF1419 and GFF1420 overlap by 14 nucleotides GFF1420 and GFF1421 are separated by 56 nucleotides GFF1421 and GFF1422 are separated by 12 nucleotides
GFF1417 - hypothetical protein, at 277,770 to 277,958
GFF1417
GFF1418 - hypothetical protein, at 278,036 to 278,362
GFF1418
GFF1419 - hypothetical protein, at 278,541 to 278,735
GFF1419
GFF1420 - hypothetical protein, at 278,722 to 278,952
GFF1420
GFF1421 - hypothetical protein, at 279,009 to 279,407
GFF1421
GFF1422 - Lactoylglutathione lyase and related lyases, at 279,420 to 279,818
GFF1422
Position (kb) 278
279 Strain fitness (log2 ratio) -1
0
1
2 at 277.571 kb on + strand at 277.572 kb on - strand at 277.581 kb on - strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.595 kb on + strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.596 kb on - strand at 277.618 kb on + strand at 277.619 kb on - strand at 277.619 kb on - strand at 277.619 kb on - strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.665 kb on + strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.666 kb on - strand at 277.667 kb on + strand at 277.667 kb on + strand at 277.667 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.669 kb on + strand at 277.670 kb on + strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 277.670 kb on - strand at 278.300 kb on + strand, within GFF1418 at 278.412 kb on + strand at 278.413 kb on - strand at 278.486 kb on + strand at 278.509 kb on + strand at 278.521 kb on + strand at 278.522 kb on - strand at 278.522 kb on - strand at 278.640 kb on + strand, within GFF1419 at 278.640 kb on + strand, within GFF1419 at 278.640 kb on + strand, within GFF1419 at 278.641 kb on - strand, within GFF1419 at 278.641 kb on - strand, within GFF1419 at 278.641 kb on - strand, within GFF1419 at 278.641 kb on - strand, within GFF1419 at 278.779 kb on + strand, within GFF1420 at 279.303 kb on + strand, within GFF1421 at 279.303 kb on + strand, within GFF1421 at 279.304 kb on - strand, within GFF1421 at 279.304 kb on - strand, within GFF1421 at 279.402 kb on + strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.403 kb on - strand at 279.549 kb on + strand, within GFF1422 at 279.549 kb on + strand, within GFF1422 at 279.550 kb on - strand, within GFF1422 at 279.550 kb on - strand, within GFF1422
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 277,571 + +0.2 277,572 - +0.3 277,581 - -0.1 277,595 + +0.3 277,595 + +0.5 277,595 + -0.5 277,595 + +0.3 277,596 - -0.3 277,596 - +1.9 277,596 - +0.1 277,596 - +0.3 277,596 - -0.1 277,618 + -0.5 277,619 - -0.4 277,619 - -0.1 277,619 - -1.4 277,665 + -0.4 277,665 + +0.3 277,665 + -0.1 277,665 + +0.4 277,665 + -0.4 277,665 + -0.4 277,665 + -0.0 277,666 - +0.1 277,666 - -0.7 277,666 - -0.2 277,666 - -0.1 277,667 + -0.6 277,667 + -0.3 277,667 + +0.7 277,669 + -0.1 277,669 + -0.1 277,669 + +1.7 277,669 + +1.9 277,669 + +0.4 277,669 + -0.5 277,669 + +0.2 277,669 + -0.8 277,669 + -0.4 277,669 + -0.6 277,669 + +0.7 277,669 + -0.1 277,669 + -0.9 277,669 + +0.4 277,669 + +0.6 277,670 + -0.3 277,670 - -0.0 277,670 - -0.4 277,670 - +0.6 277,670 - -0.9 277,670 - -1.1 277,670 - +0.2 277,670 - -0.1 277,670 - -0.1 277,670 - -0.8 278,300 + GFF1418 0.81 +0.6 278,412 + -0.1 278,413 - +0.2 278,486 + +0.2 278,509 + +0.2 278,521 + +1.1 278,522 - -0.2 278,522 - +0.2 278,640 + GFF1419 0.51 -0.7 278,640 + GFF1419 0.51 +0.1 278,640 + GFF1419 0.51 -0.1 278,641 - GFF1419 0.51 -0.9 278,641 - GFF1419 0.51 -0.3 278,641 - GFF1419 0.51 -0.7 278,641 - GFF1419 0.51 -1.1 278,779 + GFF1420 0.25 -0.2 279,303 + GFF1421 0.74 -0.6 279,303 + GFF1421 0.74 +0.1 279,304 - GFF1421 0.74 -0.6 279,304 - GFF1421 0.74 +0.9 279,402 + +0.2 279,403 - +0.4 279,403 - -0.6 279,403 - -0.3 279,403 - +0.1 279,403 - -0.1 279,549 + GFF1422 0.32 +0.2 279,549 + GFF1422 0.32 -0.8 279,550 - GFF1422 0.33 +0.4 279,550 - GFF1422 0.33 -0.4
Or see this region's nucleotide sequence