Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1376

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1375 and GFF1376 are separated by 278 nucleotidesGFF1376 and GFF1377 are separated by 435 nucleotidesGFF1377 and GFF1378 are separated by 21 nucleotides GFF1375 - Outer membrane protein (porin), at 230,793 to 231,779 GFF1375 GFF1376 - Outer membrane porin protein 32 precursor; putative 3-hydroxyphenylpropionic acid porine, at 232,058 to 233,026 GFF1376 GFF1377 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 233,462 to 234,004 GFF1377 GFF1378 - OsmC/Ohr family protein, at 234,026 to 234,475 GFF1378 Position (kb) 232 233 234Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 231.107 kb on - strand, within GFF1375at 231.842 kb on - strandat 232.119 kb on + strandat 232.120 kb on - strandat 232.144 kb on + strandat 232.158 kb on + strand, within GFF1376at 232.158 kb on + strand, within GFF1376at 232.159 kb on - strand, within GFF1376at 232.159 kb on - strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on + strand, within GFF1376at 232.185 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.186 kb on - strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.191 kb on + strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.192 kb on - strand, within GFF1376at 232.242 kb on + strand, within GFF1376at 232.242 kb on + strand, within GFF1376at 232.242 kb on + strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.243 kb on - strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.338 kb on + strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.339 kb on - strand, within GFF1376at 232.371 kb on + strand, within GFF1376at 232.371 kb on + strand, within GFF1376at 232.371 kb on + strand, within GFF1376at 232.371 kb on + strand, within GFF1376at 232.372 kb on - strand, within GFF1376at 232.372 kb on - strand, within GFF1376at 232.452 kb on + strand, within GFF1376at 232.452 kb on + strand, within GFF1376at 232.453 kb on - strand, within GFF1376at 232.453 kb on - strand, within GFF1376at 232.453 kb on - strand, within GFF1376at 232.453 kb on - strand, within GFF1376at 232.453 kb on - strand, within GFF1376at 232.458 kb on + strand, within GFF1376at 232.458 kb on + strand, within GFF1376at 232.458 kb on + strand, within GFF1376at 232.458 kb on + strand, within GFF1376at 232.458 kb on + strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.459 kb on - strand, within GFF1376at 232.486 kb on - strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.539 kb on + strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.540 kb on - strand, within GFF1376at 232.549 kb on + strand, within GFF1376at 232.549 kb on + strand, within GFF1376at 232.549 kb on + strand, within GFF1376at 232.550 kb on - strand, within GFF1376at 232.550 kb on - strand, within GFF1376at 232.550 kb on - strand, within GFF1376at 232.550 kb on - strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.581 kb on + strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.582 kb on - strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.602 kb on + strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.603 kb on - strand, within GFF1376at 232.624 kb on + strand, within GFF1376at 232.624 kb on + strand, within GFF1376at 232.625 kb on - strand, within GFF1376at 232.625 kb on - strand, within GFF1376at 233.046 kb on + strandat 233.046 kb on + strandat 233.046 kb on + strandat 233.047 kb on - strandat 233.047 kb on - strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.049 kb on + strandat 233.050 kb on - strandat 233.050 kb on - strandat 233.192 kb on + strandat 233.192 kb on + strandat 233.193 kb on - strandat 233.193 kb on - strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.195 kb on + strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.196 kb on - strandat 233.199 kb on + strandat 233.199 kb on + strandat 233.199 kb on + strandat 233.199 kb on + strandat 233.199 kb on + strandat 233.200 kb on - strandat 233.200 kb on - strandat 233.200 kb on - strandat 233.200 kb on - strandat 233.200 kb on - strandat 233.200 kb on - strandat 233.207 kb on + strandat 233.207 kb on + strandat 233.207 kb on + strandat 233.207 kb on + strandat 233.208 kb on - strandat 233.208 kb on - strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.213 kb on + strandat 233.214 kb on - strandat 233.214 kb on - strandat 233.214 kb on - strandat 233.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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231,107 - GFF1375 0.32 -1.7
231,842 - -1.2
232,119 + -2.9
232,120 - -2.1
232,144 + -0.1
232,158 + GFF1376 0.10 -1.7
232,158 + GFF1376 0.10 -3.8
232,159 - GFF1376 0.10 -1.7
232,159 - GFF1376 0.10 -2.4
232,185 + GFF1376 0.13 -5.4
232,185 + GFF1376 0.13 -3.5
232,185 + GFF1376 0.13 -2.9
232,185 + GFF1376 0.13 -1.7
232,185 + GFF1376 0.13 -2.1
232,185 + GFF1376 0.13 -5.4
232,185 - GFF1376 0.13 -4.0
232,186 - GFF1376 0.13 -4.4
232,186 - GFF1376 0.13 -4.5
232,186 - GFF1376 0.13 -5.7
232,186 - GFF1376 0.13 -1.4
232,186 - GFF1376 0.13 -7.3
232,186 - GFF1376 0.13 -2.8
232,186 - GFF1376 0.13 -4.2
232,191 + GFF1376 0.14 -4.6
232,191 + GFF1376 0.14 -1.4
232,191 + GFF1376 0.14 -2.1
232,191 + GFF1376 0.14 -3.0
232,191 + GFF1376 0.14 -1.6
232,191 + GFF1376 0.14 -3.8
232,191 + GFF1376 0.14 -3.3
232,192 - GFF1376 0.14 -4.2
232,192 - GFF1376 0.14 -3.0
232,192 - GFF1376 0.14 -0.1
232,192 - GFF1376 0.14 -2.0
232,192 - GFF1376 0.14 -2.3
232,192 - GFF1376 0.14 -1.7
232,242 + GFF1376 0.19 -3.7
232,242 + GFF1376 0.19 -2.7
232,242 + GFF1376 0.19 -3.4
232,243 - GFF1376 0.19 -2.0
232,243 - GFF1376 0.19 -2.0
232,243 - GFF1376 0.19 -4.2
232,243 - GFF1376 0.19 -2.1
232,243 - GFF1376 0.19 -1.8
232,243 - GFF1376 0.19 -3.0
232,243 - GFF1376 0.19 -2.2
232,243 - GFF1376 0.19 -3.1
232,243 - GFF1376 0.19 -1.6
232,243 - GFF1376 0.19 -3.4
232,338 + GFF1376 0.29 -3.1
232,338 + GFF1376 0.29 -1.9
232,338 + GFF1376 0.29 -1.1
232,338 + GFF1376 0.29 -2.1
232,338 + GFF1376 0.29 -2.0
232,338 + GFF1376 0.29 -2.1
232,338 + GFF1376 0.29 -2.1
232,338 + GFF1376 0.29 -1.4
232,338 + GFF1376 0.29 -2.9
232,338 + GFF1376 0.29 -1.4
232,339 - GFF1376 0.29 -1.4
232,339 - GFF1376 0.29 -1.8
232,339 - GFF1376 0.29 -1.6
232,339 - GFF1376 0.29 -1.3
232,339 - GFF1376 0.29 -1.1
232,339 - GFF1376 0.29 -1.9
232,339 - GFF1376 0.29 -1.1
232,339 - GFF1376 0.29 -1.8
232,339 - GFF1376 0.29 -2.0
232,339 - GFF1376 0.29 -2.7
232,339 - GFF1376 0.29 -2.3
232,371 + GFF1376 0.32 -1.4
232,371 + GFF1376 0.32 -1.8
232,371 + GFF1376 0.32 -0.3
232,371 + GFF1376 0.32 -2.2
232,372 - GFF1376 0.32 -1.4
232,372 - GFF1376 0.32 -0.4
232,452 + GFF1376 0.41 -1.5
232,452 + GFF1376 0.41 +0.1
232,453 - GFF1376 0.41 -0.1
232,453 - GFF1376 0.41 -0.4
232,453 - GFF1376 0.41 -0.4
232,453 - GFF1376 0.41 -1.2
232,453 - GFF1376 0.41 -1.4
232,458 + GFF1376 0.41 -1.4
232,458 + GFF1376 0.41 -2.3
232,458 + GFF1376 0.41 -1.1
232,458 + GFF1376 0.41 -1.4
232,458 + GFF1376 0.41 -1.4
232,459 - GFF1376 0.41 -1.5
232,459 - GFF1376 0.41 -1.7
232,459 - GFF1376 0.41 -1.7
232,459 - GFF1376 0.41 -0.6
232,459 - GFF1376 0.41 -1.8
232,459 - GFF1376 0.41 -1.7
232,459 - GFF1376 0.41 -0.8
232,459 - GFF1376 0.41 -1.6
232,459 - GFF1376 0.41 -1.1
232,486 - GFF1376 0.44 -1.3
232,539 + GFF1376 0.50 -1.3
232,539 + GFF1376 0.50 -4.3
232,539 + GFF1376 0.50 -2.8
232,539 + GFF1376 0.50 -2.3
232,539 + GFF1376 0.50 -1.1
232,539 + GFF1376 0.50 -6.7
232,539 + GFF1376 0.50 -2.8
232,539 + GFF1376 0.50 -1.7
232,540 - GFF1376 0.50 -4.1
232,540 - GFF1376 0.50 -3.6
232,540 - GFF1376 0.50 -2.6
232,540 - GFF1376 0.50 -3.4
232,540 - GFF1376 0.50 -4.1
232,540 - GFF1376 0.50 -2.1
232,549 + GFF1376 0.51 -1.5
232,549 + GFF1376 0.51 -3.5
232,549 + GFF1376 0.51 -1.4
232,550 - GFF1376 0.51 -2.3
232,550 - GFF1376 0.51 -2.5
232,550 - GFF1376 0.51 -0.8
232,550 - GFF1376 0.51 -1.7
232,581 + GFF1376 0.54 -1.4
232,581 + GFF1376 0.54 -0.5
232,581 + GFF1376 0.54 -1.0
232,581 + GFF1376 0.54 -0.1
232,581 + GFF1376 0.54 -1.5
232,581 + GFF1376 0.54 -2.3
232,581 + GFF1376 0.54 -1.2
232,582 - GFF1376 0.54 -0.9
232,582 - GFF1376 0.54 +0.2
232,582 - GFF1376 0.54 -0.3
232,582 - GFF1376 0.54 -0.6
232,582 - GFF1376 0.54 +0.9
232,582 - GFF1376 0.54 -1.2
232,582 - GFF1376 0.54 -0.5
232,582 - GFF1376 0.54 -0.7
232,582 - GFF1376 0.54 -0.9
232,602 + GFF1376 0.56 -0.8
232,602 + GFF1376 0.56 -2.0
232,602 + GFF1376 0.56 -1.3
232,602 + GFF1376 0.56 -1.8
232,602 + GFF1376 0.56 -1.6
232,602 + GFF1376 0.56 -0.8
232,602 + GFF1376 0.56 -1.4
232,602 + GFF1376 0.56 -0.9
232,602 + GFF1376 0.56 -1.6
232,602 + GFF1376 0.56 -1.4
232,602 + GFF1376 0.56 -0.3
232,602 + GFF1376 0.56 -2.4
232,602 + GFF1376 0.56 -1.1
232,602 + GFF1376 0.56 -2.3
232,603 - GFF1376 0.56 -1.4
232,603 - GFF1376 0.56 -1.4
232,603 - GFF1376 0.56 -0.7
232,603 - GFF1376 0.56 -1.1
232,603 - GFF1376 0.56 -0.1
232,603 - GFF1376 0.56 -1.0
232,603 - GFF1376 0.56 -1.6
232,603 - GFF1376 0.56 -3.3
232,603 - GFF1376 0.56 -0.1
232,603 - GFF1376 0.56 -1.7
232,603 - GFF1376 0.56 -0.4
232,603 - GFF1376 0.56 -2.2
232,603 - GFF1376 0.56 -2.1
232,603 - GFF1376 0.56 +1.9
232,603 - GFF1376 0.56 -0.3
232,624 + GFF1376 0.58 -3.5
232,624 + GFF1376 0.58 -1.7
232,625 - GFF1376 0.59 -1.2
232,625 - GFF1376 0.59 -1.5
233,046 + +0.4
233,046 + +0.9
233,046 + +0.3
233,047 - +0.3
233,047 - +0.3
233,049 + +0.2
233,049 + -0.1
233,049 + +1.2
233,049 + +0.1
233,049 + -0.2
233,049 + +0.0
233,049 + +0.1
233,049 + +0.7
233,050 - +0.3
233,050 - +0.9
233,192 + +1.6
233,192 + +1.0
233,193 - +0.2
233,193 - +0.5
233,195 + +0.3
233,195 + +1.0
233,195 + +0.9
233,195 + +0.1
233,195 + +1.3
233,195 + +1.7
233,195 + +0.6
233,195 + +1.1
233,195 + +0.9
233,195 + +0.2
233,196 - +1.0
233,196 - +0.4
233,196 - +0.4
233,196 - +0.9
233,196 - +0.9
233,196 - +0.4
233,196 - +2.0
233,196 - +0.6
233,196 - +0.9
233,196 - +0.9
233,199 + +1.7
233,199 + +0.9
233,199 + +0.6
233,199 + +0.9
233,199 + +1.6
233,200 - +1.2
233,200 - +0.7
233,200 - +0.6
233,200 - +0.0
233,200 - -0.1
233,200 - +0.3
233,207 + -0.5
233,207 + +0.5
233,207 + +0.2
233,207 + -0.9
233,208 - -0.2
233,208 - +1.5
233,213 + +1.1
233,213 + +0.9
233,213 + +0.8
233,213 + +0.1
233,213 + +0.2
233,213 + +0.9
233,213 + +1.1
233,213 + +0.3
233,214 - +1.5
233,214 - -0.7
233,214 - +0.2
233,214 - +2.2

Or see this region's nucleotide sequence