Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1352 and GFF1353 are separated by 25 nucleotides GFF1353 and GFF1354 overlap by 16 nucleotides GFF1354 and GFF1355 overlap by 1 nucleotides
GFF1352 - GTP-binding protein EngB, at 206,175 to 206,963
GFF1352
GFF1353 - Epoxide hydrolase, at 206,989 to 207,930
GFF1353
GFF1354 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 207,915 to 208,838
GFF1354
GFF1355 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 208,838 to 209,701
GFF1355
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 207.460 kb on + strand, within GFF1353 at 207.461 kb on - strand, within GFF1353 at 207.461 kb on - strand, within GFF1353 at 207.461 kb on - strand, within GFF1353 at 207.461 kb on - strand, within GFF1353 at 207.640 kb on + strand, within GFF1353 at 207.640 kb on + strand, within GFF1353 at 207.640 kb on + strand, within GFF1353 at 207.640 kb on + strand, within GFF1353 at 207.640 kb on + strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.641 kb on - strand, within GFF1353 at 207.643 kb on + strand, within GFF1353 at 207.644 kb on - strand, within GFF1353 at 207.644 kb on - strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.802 kb on + strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.803 kb on - strand, within GFF1353 at 207.928 kb on + strand at 207.929 kb on - strand at 207.978 kb on + strand at 207.979 kb on + strand at 207.979 kb on + strand at 207.979 kb on + strand at 207.980 kb on - strand at 207.982 kb on + strand at 207.982 kb on + strand at 207.982 kb on + strand at 207.982 kb on + strand at 207.982 kb on + strand at 207.982 kb on + strand at 207.983 kb on - strand at 207.983 kb on - strand at 207.983 kb on - strand at 207.983 kb on - strand at 208.006 kb on + strand at 208.006 kb on + strand at 208.006 kb on + strand at 208.006 kb on + strand at 208.007 kb on - strand at 208.007 kb on - strand at 208.007 kb on - strand at 208.018 kb on + strand, within GFF1354 at 208.063 kb on + strand, within GFF1354 at 208.096 kb on + strand, within GFF1354 at 208.097 kb on - strand, within GFF1354 at 208.097 kb on - strand, within GFF1354 at 208.224 kb on - strand, within GFF1354 at 208.249 kb on + strand, within GFF1354 at 208.250 kb on - strand, within GFF1354 at 208.250 kb on - strand, within GFF1354 at 208.384 kb on + strand, within GFF1354 at 208.385 kb on - strand, within GFF1354 at 208.385 kb on - strand, within GFF1354 at 209.739 kb on + strand at 209.739 kb on + strand at 209.739 kb on + strand at 209.739 kb on + strand at 209.761 kb on + strand at 209.761 kb on + strand at 209.769 kb on + strand at 209.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 207,460 + GFF1353 0.50 +0.1 207,461 - GFF1353 0.50 -0.8 207,461 - GFF1353 0.50 -0.5 207,461 - GFF1353 0.50 +0.6 207,461 - GFF1353 0.50 +0.2 207,640 + GFF1353 0.69 +0.9 207,640 + GFF1353 0.69 +1.4 207,640 + GFF1353 0.69 -0.1 207,640 + GFF1353 0.69 -0.1 207,640 + GFF1353 0.69 +0.1 207,641 - GFF1353 0.69 +0.7 207,641 - GFF1353 0.69 +0.2 207,641 - GFF1353 0.69 -0.2 207,641 - GFF1353 0.69 -0.7 207,641 - GFF1353 0.69 -0.0 207,641 - GFF1353 0.69 +0.3 207,643 + GFF1353 0.69 +0.3 207,644 - GFF1353 0.70 -0.3 207,644 - GFF1353 0.70 +0.5 207,802 + GFF1353 0.86 +0.3 207,802 + GFF1353 0.86 -0.3 207,802 + GFF1353 0.86 +1.0 207,802 + GFF1353 0.86 -0.9 207,802 + GFF1353 0.86 -0.3 207,802 + GFF1353 0.86 +0.1 207,802 + GFF1353 0.86 +1.2 207,802 + GFF1353 0.86 +0.5 207,802 + GFF1353 0.86 -0.1 207,802 + GFF1353 0.86 +0.3 207,803 - GFF1353 0.86 -0.4 207,803 - GFF1353 0.86 +0.0 207,803 - GFF1353 0.86 +3.2 207,803 - GFF1353 0.86 +0.2 207,803 - GFF1353 0.86 -0.0 207,803 - GFF1353 0.86 +0.4 207,803 - GFF1353 0.86 +0.2 207,803 - GFF1353 0.86 +1.1 207,803 - GFF1353 0.86 -1.7 207,928 + -1.9 207,929 - -1.1 207,978 + -2.3 207,979 + -1.7 207,979 + -2.3 207,979 + -0.1 207,980 - -1.1 207,982 + -2.4 207,982 + -2.6 207,982 + -2.1 207,982 + -3.2 207,982 + +0.9 207,982 + -1.7 207,983 - -1.4 207,983 - -1.4 207,983 - -4.5 207,983 - -2.7 208,006 + -3.4 208,006 + -2.7 208,006 + -3.6 208,006 + -0.7 208,007 - -2.1 208,007 - -2.8 208,007 - -1.7 208,018 + GFF1354 0.11 -1.7 208,063 + GFF1354 0.16 -3.9 208,096 + GFF1354 0.20 -1.7 208,097 - GFF1354 0.20 +0.3 208,097 - GFF1354 0.20 -0.7 208,224 - GFF1354 0.33 -0.1 208,249 + GFF1354 0.36 -1.4 208,250 - GFF1354 0.36 -1.4 208,250 - GFF1354 0.36 -2.9 208,384 + GFF1354 0.51 -1.4 208,385 - GFF1354 0.51 -2.3 208,385 - GFF1354 0.51 -1.4 209,739 + -0.9 209,739 + +0.6 209,739 + -1.1 209,739 + +0.9 209,761 + +0.3 209,761 + -0.7 209,769 + -0.3 209,787 + +0.1
Or see this region's nucleotide sequence