Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1350

Experiment: Ying_Others16 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1349 and GFF1350 overlap by 4 nucleotidesGFF1350 and GFF1351 are separated by 191 nucleotidesGFF1351 and GFF1352 are separated by 103 nucleotides GFF1349 - Cytochrome c-type biogenesis protein CcsA/ResC, at 201,745 to 203,115 GFF1349 GFF1350 - Cytochrome c-type biogenesis protein Ccs1/ResB, at 203,112 to 205,265 GFF1350 GFF1351 - Cytochrome c4, at 205,457 to 206,071 GFF1351 GFF1352 - GTP-binding protein EngB, at 206,175 to 206,963 GFF1352 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2at 202.265 kb on + strand, within GFF1349at 202.482 kb on - strand, within GFF1349at 202.820 kb on + strand, within GFF1349at 202.821 kb on - strand, within GFF1349at 202.962 kb on - strand, within GFF1349at 203.110 kb on - strandat 203.110 kb on - strandat 203.263 kb on + strandat 203.953 kb on + strand, within GFF1350at 203.954 kb on - strand, within GFF1350at 203.954 kb on - strand, within GFF1350at 203.954 kb on - strand, within GFF1350at 203.998 kb on + strand, within GFF1350at 203.998 kb on + strand, within GFF1350at 203.999 kb on - strand, within GFF1350at 203.999 kb on - strand, within GFF1350at 204.310 kb on + strand, within GFF1350at 204.934 kb on + strand, within GFF1350at 204.934 kb on + strand, within GFF1350at 205.037 kb on - strand, within GFF1350at 205.100 kb on - strandat 205.378 kb on + strandat 205.378 kb on + strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.379 kb on - strandat 205.398 kb on + strandat 205.398 kb on + strandat 205.398 kb on + strandat 205.398 kb on + strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.399 kb on - strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.412 kb on + strandat 205.413 kb on - strandat 205.413 kb on - strandat 205.413 kb on - strandat 205.413 kb on - strandat 205.413 kb on - strandat 205.413 kb on - strandat 205.414 kb on + strandat 205.414 kb on + strandat 205.414 kb on + strandat 205.415 kb on - strandat 205.477 kb on - strandat 205.477 kb on - strandat 205.587 kb on + strand, within GFF1351at 205.587 kb on + strand, within GFF1351at 205.588 kb on - strand, within GFF1351at 205.588 kb on - strand, within GFF1351at 205.588 kb on - strand, within GFF1351at 205.588 kb on - strand, within GFF1351at 205.698 kb on + strand, within GFF1351at 205.698 kb on + strand, within GFF1351at 205.698 kb on + strand, within GFF1351at 205.698 kb on + strand, within GFF1351at 205.699 kb on - strand, within GFF1351at 205.699 kb on - strand, within GFF1351at 205.750 kb on + strand, within GFF1351at 205.750 kb on + strand, within GFF1351at 205.750 kb on + strand, within GFF1351at 205.774 kb on - strand, within GFF1351at 205.878 kb on + strand, within GFF1351at 205.878 kb on + strand, within GFF1351at 205.878 kb on - strand, within GFF1351at 205.879 kb on - strand, within GFF1351at 205.879 kb on - strand, within GFF1351at 205.879 kb on - strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.965 kb on + strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 205.966 kb on - strand, within GFF1351at 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
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202,265 + GFF1349 0.38 -0.7
202,482 - GFF1349 0.54 -0.7
202,820 + GFF1349 0.78 -1.7
202,821 - GFF1349 0.78 -2.4
202,962 - GFF1349 0.89 -0.7
203,110 - -0.4
203,110 - -2.1
203,263 + -1.7
203,953 + GFF1350 0.39 -0.7
203,954 - GFF1350 0.39 -0.7
203,954 - GFF1350 0.39 -0.7
203,954 - GFF1350 0.39 -2.4
203,998 + GFF1350 0.41 -2.6
203,998 + GFF1350 0.41 -1.4
203,999 - GFF1350 0.41 -2.1
203,999 - GFF1350 0.41 -0.7
204,310 + GFF1350 0.56 -1.4
204,934 + GFF1350 0.85 -1.1
204,934 + GFF1350 0.85 -2.6
205,037 - GFF1350 0.89 -1.4
205,100 - -1.7
205,378 + +0.9
205,378 + -0.6
205,379 - +1.6
205,379 - +0.2
205,379 - +0.1
205,379 - -0.4
205,379 - -0.1
205,379 - -0.3
205,379 - +0.3
205,379 - +0.1
205,379 - -0.7
205,398 + -1.0
205,398 + -1.3
205,398 + -0.7
205,398 + -0.3
205,399 - -0.4
205,399 - +0.6
205,399 - -0.6
205,399 - +0.4
205,399 - -0.1
205,399 - -0.1
205,399 - -0.4
205,412 + -0.9
205,412 + -0.5
205,412 + -0.9
205,412 + -0.7
205,412 + -0.0
205,412 + -0.4
205,412 + +0.9
205,412 + +0.9
205,412 + -0.4
205,413 - -1.1
205,413 - +0.4
205,413 - -0.7
205,413 - -0.2
205,413 - -0.5
205,413 - -0.1
205,414 + -0.9
205,414 + -1.9
205,414 + -0.5
205,415 - -0.1
205,477 - -2.1
205,477 - +1.9
205,587 + GFF1351 0.21 -0.6
205,587 + GFF1351 0.21 -0.1
205,588 - GFF1351 0.21 +0.0
205,588 - GFF1351 0.21 -0.5
205,588 - GFF1351 0.21 +0.0
205,588 - GFF1351 0.21 +0.3
205,698 + GFF1351 0.39 -0.5
205,698 + GFF1351 0.39 -0.2
205,698 + GFF1351 0.39 -1.1
205,698 + GFF1351 0.39 +0.0
205,699 - GFF1351 0.39 -0.4
205,699 - GFF1351 0.39 -0.2
205,750 + GFF1351 0.48 +0.4
205,750 + GFF1351 0.48 -0.4
205,750 + GFF1351 0.48 +0.3
205,774 - GFF1351 0.52 +0.6
205,878 + GFF1351 0.68 -0.3
205,878 + GFF1351 0.68 -1.4
205,878 - GFF1351 0.68 +0.7
205,879 - GFF1351 0.69 -1.1
205,879 - GFF1351 0.69 +0.3
205,879 - GFF1351 0.69 -0.4
205,965 + GFF1351 0.83 -0.1
205,965 + GFF1351 0.83 +1.9
205,965 + GFF1351 0.83 -0.1
205,965 + GFF1351 0.83 -1.4
205,965 + GFF1351 0.83 +1.9
205,965 + GFF1351 0.83 -0.3
205,965 + GFF1351 0.83 -0.0
205,965 + GFF1351 0.83 -0.1
205,965 + GFF1351 0.83 -0.4
205,966 - GFF1351 0.83 +0.1
205,966 - GFF1351 0.83 +0.3
205,966 - GFF1351 0.83 -0.5
205,966 - GFF1351 0.83 -0.4
205,966 - GFF1351 0.83 +0.1
205,966 - GFF1351 0.83 +0.9
206,147 + -0.3
206,147 + -0.1
206,147 + +1.0
206,148 - -0.0

Or see this region's nucleotide sequence