Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1338 and GFF1339 overlap by 11 nucleotides GFF1339 and GFF1340 overlap by 1 nucleotides GFF1340 and GFF1341 are separated by 3 nucleotides GFF1341 and GFF1342 are separated by 177 nucleotides GFF1342 and GFF1343 overlap by 1 nucleotides
GFF1338 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 190,968 to 193,265
GFF1338
GFF1339 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 193,255 to 193,584
GFF1339
GFF1340 - hypothetical protein, at 193,584 to 193,826
GFF1340
GFF1341 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 193,830 to 195,119
GFF1341
GFF1342 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 195,297 to 196,079
GFF1342
GFF1343 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 196,079 to 196,789
GFF1343
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 192.855 kb on + strand, within GFF1338 at 192.856 kb on - strand, within GFF1338 at 192.907 kb on - strand, within GFF1338 at 193.050 kb on + strand at 193.051 kb on - strand at 193.051 kb on - strand at 193.051 kb on - strand at 193.051 kb on - strand at 193.051 kb on - strand at 193.093 kb on - strand at 193.095 kb on + strand at 193.095 kb on + strand at 193.095 kb on + strand at 193.096 kb on - strand at 193.096 kb on - strand at 193.096 kb on - strand at 193.096 kb on - strand at 193.367 kb on + strand, within GFF1339 at 193.367 kb on + strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.368 kb on - strand, within GFF1339 at 193.499 kb on + strand, within GFF1339 at 193.569 kb on - strand at 193.585 kb on + strand at 193.585 kb on + strand at 193.585 kb on + strand at 193.585 kb on + strand at 193.586 kb on - strand at 193.586 kb on - strand at 193.586 kb on - strand at 193.586 kb on - strand at 193.586 kb on - strand at 193.619 kb on + strand, within GFF1340 at 193.619 kb on + strand, within GFF1340 at 193.619 kb on + strand, within GFF1340 at 193.619 kb on + strand, within GFF1340 at 193.619 kb on + strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.620 kb on - strand, within GFF1340 at 193.705 kb on + strand, within GFF1340 at 193.705 kb on + strand, within GFF1340 at 193.706 kb on - strand, within GFF1340 at 193.706 kb on - strand, within GFF1340 at 193.706 kb on - strand, within GFF1340 at 193.959 kb on + strand, within GFF1341 at 194.034 kb on + strand, within GFF1341 at 194.346 kb on + strand, within GFF1341 at 194.347 kb on - strand, within GFF1341 at 194.347 kb on - strand, within GFF1341 at 194.409 kb on + strand, within GFF1341 at 194.745 kb on + strand, within GFF1341 at 194.745 kb on + strand, within GFF1341 at 194.746 kb on - strand, within GFF1341 at 194.820 kb on + strand, within GFF1341 at 194.821 kb on - strand, within GFF1341 at 195.009 kb on + strand at 195.010 kb on - strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.210 kb on + strand at 195.210 kb on + strand at 195.211 kb on - strand at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.760 kb on - strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 192,855 + GFF1338 0.82 -0.9 192,856 - GFF1338 0.82 -1.7 192,907 - GFF1338 0.84 -1.1 193,050 + -1.3 193,051 - -1.1 193,051 - -0.7 193,051 - -0.7 193,051 - -0.6 193,051 - -0.7 193,093 - -0.8 193,095 + -1.4 193,095 + -0.5 193,095 + -0.1 193,096 - -0.6 193,096 - +0.0 193,096 - -0.3 193,096 - -2.1 193,367 + GFF1339 0.34 -0.7 193,367 + GFF1339 0.34 -0.2 193,368 - GFF1339 0.34 -0.5 193,368 - GFF1339 0.34 +0.1 193,368 - GFF1339 0.34 -0.1 193,368 - GFF1339 0.34 -1.4 193,368 - GFF1339 0.34 -0.8 193,368 - GFF1339 0.34 +0.2 193,368 - GFF1339 0.34 -0.6 193,368 - GFF1339 0.34 +0.5 193,499 + GFF1339 0.74 +0.7 193,569 - -0.6 193,585 + +0.6 193,585 + +0.2 193,585 + +1.2 193,585 + +0.7 193,586 - -0.6 193,586 - -0.1 193,586 - +0.2 193,586 - +0.3 193,586 - +0.1 193,619 + GFF1340 0.14 +0.9 193,619 + GFF1340 0.14 -5.4 193,619 + GFF1340 0.14 -2.4 193,619 + GFF1340 0.14 -0.4 193,619 + GFF1340 0.14 +0.9 193,620 - GFF1340 0.15 +0.3 193,620 - GFF1340 0.15 -0.2 193,620 - GFF1340 0.15 +0.8 193,620 - GFF1340 0.15 -0.0 193,620 - GFF1340 0.15 -0.1 193,620 - GFF1340 0.15 +0.1 193,620 - GFF1340 0.15 -0.2 193,705 + GFF1340 0.50 -4.2 193,705 + GFF1340 0.50 -3.6 193,706 - GFF1340 0.50 -2.9 193,706 - GFF1340 0.50 -2.1 193,706 - GFF1340 0.50 -3.7 193,959 + GFF1341 0.10 -0.7 194,034 + GFF1341 0.16 -2.4 194,346 + GFF1341 0.40 -3.7 194,347 - GFF1341 0.40 -1.7 194,347 - GFF1341 0.40 -1.4 194,409 + GFF1341 0.45 -2.1 194,745 + GFF1341 0.71 -1.4 194,745 + GFF1341 0.71 -1.1 194,746 - GFF1341 0.71 -2.8 194,820 + GFF1341 0.77 -1.7 194,821 - GFF1341 0.77 -5.1 195,009 + -1.7 195,010 - -2.4 195,208 + +0.2 195,208 + +0.1 195,208 + +0.5 195,208 + -0.0 195,208 + +0.1 195,208 + +0.2 195,208 + -0.4 195,209 - -0.2 195,209 - -1.0 195,209 - +0.6 195,209 - -0.3 195,210 + -0.4 195,210 + -0.3 195,211 - +0.0 195,645 + GFF1342 0.44 -0.3 195,645 + GFF1342 0.44 +0.0 195,645 + GFF1342 0.44 -0.4 195,646 - GFF1342 0.45 +0.1 195,646 - GFF1342 0.45 -0.1 195,759 + GFF1342 0.59 +0.5 195,759 + GFF1342 0.59 +0.5 195,760 - GFF1342 0.59 -0.2 195,999 + GFF1342 0.90 +1.3 195,999 + GFF1342 0.90 -0.5 195,999 + GFF1342 0.90 +0.3 196,038 + +1.2 196,038 + -0.1 196,038 + +0.9 196,038 + -0.5 196,038 + -0.4 196,039 - +0.4 196,039 - -0.4 196,039 - +0.7 196,039 - -0.2 196,039 - +0.9 196,039 - -0.3
Or see this region's nucleotide sequence